View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_35 (Length: 274)
Name: NF18025_low_35
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 2747704 - 2747937
Alignment:
| Q |
18 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2747704 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagaatgctgatgaacatgagtcaccgtat |
2747803 |
T |
|
| Q |
118 |
ccttccattcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacagaaaatatcaagatattacaccataaccgatcaaatttgt |
217 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747804 |
ccgtccattcgggtgctgcattagaccgg--tatggataatataaagtttaatgaagacagaaaatatcaagatattacaccataaccgatcaaatttgt |
2747901 |
T |
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| Q |
218 |
ttaccatgttgtgattcatggttttcatctgcaaca |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2747902 |
ttaccatgttgtgattcatggttttcatctgcaaca |
2747937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 2755748 - 2755945
Alignment:
| Q |
18 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
117 |
Q |
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|||||| ||||||||| ||| |||||||| ||| ||| ||||||||||||||||||| ||| ||| |||||||| || |||||||||||||||||||||| |
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| T |
2755748 |
tataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtat |
2755847 |
T |
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| Q |
118 |
ccttccattcgggtgctgcattagaccggtatatggataatataaagtttaatgaagacag-aaaatatcaagatattacaccataaccgatcaaatttg |
216 |
Q |
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| T |
2755848 |
ccgtccgttcgggggctgcattagaccag--tatgcatgttataaagttcaatgaaaacagaaaaatattaag--attacaccataactgatcaaatttg |
2755943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 2372998 - 2373123
Alignment:
| Q |
18 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcaccgtat |
117 |
Q |
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|||||| ||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||| |
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| T |
2372998 |
tataattaacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcaccgtat |
2373097 |
T |
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| Q |
118 |
ccttccattcgggtgctgcattagac |
143 |
Q |
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|| ||| |||||| |||||||||||| |
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| T |
2373098 |
ccatccgttcgggggctgcattagac |
2373123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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