View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_39 (Length: 249)
Name: NF18025_low_39
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 51112083 - 51112252
Alignment:
| Q |
51 |
cattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtc |
150 |
Q |
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| T |
51112083 |
cattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtatgctgcatctttggtcttctcggcagcatcaccagcatagtc |
51112182 |
T |
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| Q |
151 |
tttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatctttggtcttctctgct |
220 |
Q |
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| T |
51112183 |
tttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgct |
51112252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 51112253 - 51112344
Alignment:
| Q |
80 |
gcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
171 |
Q |
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| T |
51112253 |
gcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatc |
51112344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 51111995 - 51112081
Alignment:
| Q |
83 |
tcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgca |
169 |
Q |
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| T |
51111995 |
tcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgca |
51112081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 51112234 - 51112313
Alignment:
| Q |
115 |
atctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcac |
194 |
Q |
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| T |
51112234 |
atctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcac |
51112313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 51111989 - 51112065
Alignment:
| Q |
131 |
gcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatcttt |
207 |
Q |
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| T |
51111989 |
gcagcttcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtcttt |
51112065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 51111875 - 51111936
Alignment:
| Q |
116 |
tctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggc |
177 |
Q |
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| T |
51111875 |
tctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggc |
51111936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 51112165 - 51112257
Alignment:
| Q |
79 |
agcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
171 |
Q |
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| T |
51112165 |
agcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgctgcatc |
51112257 |
T |
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