View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_4 (Length: 668)
Name: NF18025_low_4
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 7 - 668
Target Start/End: Complemental strand, 39601479 - 39600818
Alignment:
| Q |
7 |
acatcatcaacaacaactcagcttcgtcttcacacactcacacttacttcaatgatcactgcttgcagagcttcttcttcaagagctaacccactttctc |
106 |
Q |
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| T |
39601479 |
acatcatcaacaacaactcagcttcgtcttcacacactcacacttacttcaatgatcactgcttgcagagcttcttcttcaagagctaacccactttctc |
39601380 |
T |
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| Q |
107 |
tacactcttccctacattccaaaccatcatatttatctttgagtctctttttccctcgccactttcacaagagcattgctctctcctcaacaacacagtg |
206 |
Q |
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| T |
39601379 |
tacgctcttccctacattccaaaccatcatttttatctttgagtctctttttccctcgccactttcacaagagcattgctctctcctcaacaacacagtg |
39601280 |
T |
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| Q |
207 |
caaacccagaagccatttgggtggaaatttgaataatgggctagaagaagatggtgaccgtgaggttcactgtgagcttcaagtggtttcttggagagaa |
306 |
Q |
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| T |
39601279 |
caaacccagaagccatttgggtggaaatttgaataatgggctagaagaagatggtgaccgtgaggttcactgtgagcttcaagtggtttcttggagagaa |
39601180 |
T |
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| Q |
307 |
cggagagttaaggctgagatttctatcaatgctgatattaactctgtttggaatgctttaactgattatgaacatctagctgatttcataccaaatcttg |
406 |
Q |
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| T |
39601179 |
cggagagttaaggctgagatttctatcaatgctgatattaactctgtttggaatgctttaactgattatgaacatctagctgatttcataccaaatcttg |
39601080 |
T |
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| Q |
407 |
tttggaggtaatctatcaagtaaattaaacacaacttcatcataagggcataaactcttcaggatagcttgccaaaacaacttatgaaaatgttttgact |
506 |
Q |
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| T |
39601079 |
tttggaggtaatctatcaagtaaattaaacacaatttcatcataagggcataaactcttcaggatagcttgccaaaacaacttatgaaaatgttttgact |
39600980 |
T |
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| Q |
507 |
ttcnnnnnnngttatagaaataaataacttttacataagcacttatatgatataaacacttgattaagttgcttatttgttagtgggcgtattccttgcc |
606 |
Q |
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| T |
39600979 |
ttttttttttgttatagaaataaataacttgtacataagcacttatatgatataaacacttgattaagttacttatttgttagtgggcgtattccttgcc |
39600880 |
T |
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| Q |
607 |
catttcctggaaggatatggttagagcaaagaggatttcaaagggcaatgtattggcacatt |
668 |
Q |
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| T |
39600879 |
catttcctggaaggatatggttagagcaaagaggatttcaaagggcaatgtattggcacatt |
39600818 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 46213758 - 46213722
Alignment:
| Q |
528 |
aaataacttttacataagcacttatatgatataaaca |
564 |
Q |
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| T |
46213758 |
aaatagcttttacataagcacttatatgatataaaca |
46213722 |
T |
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