View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18025_low_41 (Length: 245)
Name: NF18025_low_41
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_41 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 32822575 - 32822803
Alignment:
| Q |
17 |
aaaaagggagagaaagttgaaggagtttttccatttgctcagagtgatcgatcatggctgaagtaaccgtttccaattgtaacgaggaactcctgaattt |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32822575 |
aaaaagggagagaaagttgaatgagtttttccatttgctcagagtgatctttcatggctgaagtaaccgtttcaaattgtaacgaggaactcctgaattt |
32822674 |
T |
|
| Q |
117 |
gcaagcacaccgcaagtctcttgatgctgctaatcaacaaaaccctaaccctaaggaacaactcgaaggcaagaagaagcacctcttggaagaactcaaa |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32822675 |
gcaagcacaccgcaagttgcttgatgctgctaatcaacaaaaccctaaccctaaggaacaactccaaggcaagaagaagcacctcttggaagaactcaaa |
32822774 |
T |
|
| Q |
217 |
tctgctttgttgaaaaatcctaacttctt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32822775 |
tctgctttgttgaaaaatcctaacttctt |
32822803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 52721446 - 52721497
Alignment:
| Q |
173 |
aacaactcgaaggcaagaagaagcacctcttggaagaactcaaatctgcttt |
224 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
52721446 |
aacaactcgaaggcaagaagaaacgtctcttggaagaactcgaatctgcttt |
52721497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University