View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_45 (Length: 237)
Name: NF18025_low_45
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_45 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 53184718 - 53184482
Alignment:
| Q |
1 |
acattttaataaaccacctcccttagcttacctcatctcccatttctgtgctataaatatccttccatgnnnnnnnnnatacatgatcaacatgctggtt |
100 |
Q |
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| T |
53184718 |
acattttaataaaccacctcccttagcttacctcatctcccatttctatgctataaatatccttccatgtttttttttatacatgatcaacatgctggtt |
53184619 |
T |
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| Q |
101 |
cttgatttccttaattttcgttctcactaacatgtgttctaactctaatggatacaaaatgataaatcttttttaaggccataagtcatctatattctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53184618 |
cttgatttccttaattttcgttctcactaacatgtgttctaactctaatggatacaaaatgataaatcttttttaaggccataagtcatctatattctca |
53184519 |
T |
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| Q |
201 |
aggtttgaactttggtcatgaagcatacgaggccctc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
53184518 |
aggtttgaactttggtcatgaagcatacgaggccctc |
53184482 |
T |
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