View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_5 (Length: 611)
Name: NF18025_low_5
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 16 - 602
Target Start/End: Complemental strand, 37862179 - 37861592
Alignment:
| Q |
16 |
atcatgagattgacactcttaagtcaagtatataaatagagaacctgctattatatgaaacgaagctaggtaccaagagttttagagaagatgcagtaga |
115 |
Q |
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| T |
37862179 |
atcatgagattgacactcttaagtcaagtatataaatagagaacctgctattatatgaaacgaagctaggtaccaagagttttagagaagatgcagaaga |
37862080 |
T |
|
| Q |
116 |
caagttatgacagttaagaacttnnnnnnnnnnnnnnnnnttcaacattatctcatggtcatagagaaaaggggtgagctaaaagaaaaaagagtgaagc |
215 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
37862079 |
cactttatgacagttaagaacttaaaaaagaaaatgaaaattcaacattatctcatggtcatagagaaaaagggtgagctagaagaaaaaagagtgaagc |
37861980 |
T |
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| Q |
216 |
aacataagagaactttagttgaattttgaactaaatatggaacagttgaaacatttgaagagttaacatgttcatttagaaactatggtcactacaaaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
37861979 |
aacataagagaactttagttgaattttgaactaaatatggaacagttgaaacatttgaagagttaacatgtttatttagaaactatggtcactaaaaaag |
37861880 |
T |
|
| Q |
316 |
tccaagaatactcaa-tgtggaaattctgtatcgatgaatgcacaaatgtggcgatttttaccattaatcgctacagcattgtagaaaaacattaatgct |
414 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37861879 |
tccaagaatactcaaatgtggaaattctgtatcgatgaatgcacaaatgtggtgatttttaccattaatcgctacagcattgtagaaaaacattaatgct |
37861780 |
T |
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| Q |
415 |
tgtgagagatttacaaaataatggatgtcctagagcacaaggaaatatttatgacttgttccaataggtttgagagatttttagcattcatgaatatgga |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37861779 |
tgtgagagatttacaaaataatggatgtcctagagcacaaggaaatatttatgacttgttccaataggtttgagagatttttagcattcatgaatatgga |
37861680 |
T |
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| Q |
515 |
tctattcattaaaaaggtttaatctaattctcaaactggtttgaagatggttgacaagggcgtccaagtaatgtgtccctatgcttct |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37861679 |
tctattcattaaaaaggtttaatctaattctcaaactggtttgaagatggttgacaagggcgtccaagtaatgtgtccctatgcttct |
37861592 |
T |
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