View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_52 (Length: 210)
Name: NF18025_low_52
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 25733063 - 25732898
Alignment:
| Q |
16 |
caaaagacaagagatgcattaattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtactt |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25733063 |
caaaagacaagagatacattaattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccagtttatatgtccagacaaggtactt |
25732964 |
T |
|
| Q |
116 |
aagagtcgcaactatgctcgggcttcctaaaccccgacagttccaggctatgaaacaaattttcct |
181 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| |
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|
| T |
25732963 |
aagagtcggaactatgctcgggcttcctagaccccgacagttccaggctataaaactcattttcct |
25732898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 30472584 - 30472708
Alignment:
| Q |
36 |
aattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgctcg |
135 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||| | |||| | |||| |
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| T |
30472584 |
aattcttcaattttatttaaagctgccattgtttcagacagaaaaattccttccggtttgtatgttcggaccaggtacttaagagtgggaactgtactcg |
30472683 |
T |
|
| Q |
136 |
ggcttcctaaaccccgacagttcca |
160 |
Q |
| |
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|||| || | |||||||||||||| |
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| T |
30472684 |
ggctgcccaggccccgacagttcca |
30472708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 16939776 - 16939902
Alignment:
| Q |
34 |
ttaattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgct |
133 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| | || |||||||| |||| ||| ||||| || ||| | | |||| | || |
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| T |
16939776 |
ttaattcttcaattttatttaaagctgccattgtttcagacagaaaaattgcatctggtttataagtccggacgaggtatttgagattaggaactgtact |
16939875 |
T |
|
| Q |
134 |
cgggcttcctaaaccccgacagttcca |
160 |
Q |
| |
|
|||||| |||||||||| ||||||||| |
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| T |
16939876 |
cgggctacctaaacccctacagttcca |
16939902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 45278188 - 45278312
Alignment:
| Q |
36 |
aattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgctcg |
135 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||||||||| | |||| | |||| |
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| T |
45278188 |
aattcttcaattttatttaaagctgccattgtttcagacagaaaaattccttccggtttgtatgttcggaccaggtacttaagagtgggaactgtactcg |
45278287 |
T |
|
| Q |
136 |
ggcttcctaaaccccgacagttcca |
160 |
Q |
| |
|
|||| || | |||||||||||||| |
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| T |
45278288 |
ggctgcccaggccccgacagttcca |
45278312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 35318563 - 35318442
Alignment:
| Q |
39 |
tcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgctcgggc |
138 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| || |||| |||||||||||| || | | |||| | ||||||| |
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|
| T |
35318563 |
tcttcaattttatttagagctgtcattgtttcagacagaaaaatcccttccggtttgtaggtccggacaaggtacttgaggttgggaactgtactcgggc |
35318464 |
T |
|
| Q |
139 |
ttcctaaaccccgacagttcca |
160 |
Q |
| |
|
| || | ||||||||||||||| |
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|
| T |
35318463 |
taccaagaccccgacagttcca |
35318442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 161
Target Start/End: Original strand, 12275870 - 12275997
Alignment:
| Q |
34 |
ttaattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgct |
133 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| ||||| ||||||| ||||| ||||| || ||||||| ||||||||| | || |||||| |
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| T |
12275870 |
ttaattcttcaattttatttaaggttgtcattgtttcagatagaaatattccttatggtttgtatgttcaaacaaggtgcttaagagtgggaattatgct |
12275969 |
T |
|
| Q |
134 |
cgggcttcctaaaccccgacagttccag |
161 |
Q |
| |
|
| |||| | | ||||| |||||||||| |
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| T |
12275970 |
caggctactcagaccccaacagttccag |
12275997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 33308868 - 33308989
Alignment:
| Q |
39 |
tcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgctcgggc |
138 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||| || |||| |||||||||||| || | | |||| | ||||||| |
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|
| T |
33308868 |
tctttaattttatttagagctgtcattgtttcagacagaaaaatcccttccggtttgtaggtccggacaaggtacttgaggttgggaactgtactcgggc |
33308967 |
T |
|
| Q |
139 |
ttcctaaaccccgacagttcca |
160 |
Q |
| |
|
| || | ||||||||||||||| |
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|
| T |
33308968 |
taccaagaccccgacagttcca |
33308989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 9613453 - 9613577
Alignment:
| Q |
36 |
aattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgctcg |
135 |
Q |
| |
|
||||||||||||||||| | | || ||||||||||||||| | ||| | ||||||||||| |||| ||| |||||||| | | | | |||| |||||| |
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|
| T |
9613453 |
aattcttcaattttattagatgttgtcattgtttcagacaggattattgcatccggtttataggtccggactaggtactttaaattaggaactgtgctcg |
9613552 |
T |
|
| Q |
136 |
ggcttcctaaaccccgacagttcca |
160 |
Q |
| |
|
|||| |||||||||||||||||||| |
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|
| T |
9613553 |
ggctacctaaaccccgacagttcca |
9613577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 3966248 - 3966372
Alignment:
| Q |
36 |
aattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgctcg |
135 |
Q |
| |
|
||||||||||||||||| | | || |||||||||| ||| | ||| | ||||||||||| |||| ||| |||||||| | | | | |||| |||||| |
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|
| T |
3966248 |
aattcttcaattttattagacgttgtcattgtttcatacatgattattgcatccggtttataggtcctgactaggtactttaaattaggaactgtgctcg |
3966347 |
T |
|
| Q |
136 |
ggcttcctaaaccccgacagttcca |
160 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
3966348 |
ggctacctaaaccccgacagttcca |
3966372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 2539746 - 2539622
Alignment:
| Q |
36 |
aattcttcaattttatttaaggctgccattgtttcagacagaaaaattccttccggtttatatgtccagacaaggtacttaagagtcgcaactatgctcg |
135 |
Q |
| |
|
||||||||||||||||| | | || |||||||||| | ||| ||| | |||| |||||| |||| ||| |||||||| | | | | || | |||||| |
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|
| T |
2539746 |
aattcttcaattttattagacgttgttattgtttcaggcggaattattgcatccgatttataggtccggactaggtactttacattggaaattgtgctcg |
2539647 |
T |
|
| Q |
136 |
ggcttcctaaaccccgacagttcca |
160 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
2539646 |
ggctacctaaaccccgacagttcca |
2539622 |
T |
|
Back To:
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