View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18025_low_6 (Length: 594)

Name: NF18025_low_6
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18025_low_6
NF18025_low_6
[»] chr1 (23 HSPs)
chr1 (1-423)||(11881123-11881546)
chr1 (1-413)||(11890500-11890912)
chr1 (59-423)||(11903623-11903988)
chr1 (19-400)||(52819771-52820152)
chr1 (1-92)||(11881719-11881810)
chr1 (1-92)||(11890953-11891044)
chr1 (5-92)||(11891085-11891172)
chr1 (2-92)||(11904048-11904138)
chr1 (5-92)||(11881851-11881938)
chr1 (2-92)||(11881587-11881677)
chr1 (2-92)||(11904180-11904270)
chr1 (2-92)||(11904312-11904402)
chr1 (2-92)||(11904444-11904534)
chr1 (2-92)||(11904576-11904666)
chr1 (5-92)||(11904708-11904795)
chr1 (19-81)||(52819603-52819665)
chr1 (5-66)||(52819193-52819254)
chr1 (23-78)||(52819283-52819338)
chr1 (49-86)||(11882673-11882710)
chr1 (20-81)||(52819400-52819461)
chr1 (49-86)||(11882625-11882662)
chr1 (49-86)||(11891859-11891896)
chr1 (50-86)||(11879623-11879659)
[»] chr6 (1 HSPs)
chr6 (17-53)||(12163312-12163348)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 11881546 - 11881123
Alignment:
Q  1 aggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggctta 100  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11881546 aggtgaataataatggaccggtggaggtggtgagttgtatttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggctta 11881447  T
Q  101 ggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttg 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11881446 ggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttg 11881347  T
Q  201 ttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtggaaccatatttgacatagtcaaa 300  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11881346 ttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaa 11881247  T
Q  301 gtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccggctttgcatgttacctcaacaacagcacct 400  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||| |||    
T  11881246 gtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgacaattttgctcccggctttgcatgtcacctcaacaacagctcct 11881147  T
Q  401 gc-cccaaaacaaaattagtttac 423  Q
    || |||| || |||||||||||||    
T  11881146 gcacccataataaaattagtttac 11881123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 11890912 - 11890500
Alignment:
Q  1 aggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggctta 100  Q
    |||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11890912 aggtgagtaataatggacgggtggaggtggtgagttatacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttg 11890813  T
Q  101 ggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttg 200  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11890812 gacttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttg 11890713  T
Q  201 ttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtggaaccatatttgacatagtcaaa 300  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  11890712 ttccttggtttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaa 11890613  T
Q  301 gtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacgattttgcttccggctttgcatgttacctcaacaacagcacct 400  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||| |||||||||||||| || |||||||||||||||    
T  11890612 gtccttaactgtgatggcatactttccattgatcttagttttaccgtaagccttgatgattttgctcccggctttgcatgtcacttcaacaacagcacct 11890513  T
Q  401 gccccaaaacaaa 413  Q
    | |||| ||||||    
T  11890512 gtcccataacaaa 11890500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 59 - 423
Target Start/End: Complemental strand, 11903988 - 11903623
Alignment:
Q  59 ggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttgtcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttga 158  Q
    |||||||||| |  || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11903988 ggtggaggtggtgagttgtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttga 11903889  T
Q  159 gcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatattgaagggtgaacccttaggtggagcatatag 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  11903888 gcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaag 11903789  T
Q  259 ggcagccttgcacactgtggaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagttttaccataagccttaacg 358  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  11903788 ggtagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtttttccataagccttgaca 11903689  T
Q  359 attttgcttccggctttgcatgttacctcaacaacagcacctgc-cccaaaacaaaattagtttac 423  Q
    |||||||| |||||||||||||| |||||||||||||| ||||| |||| || |||||||||||||    
T  11903688 attttgctcccggctttgcatgtcacctcaacaacagctcctgcacccataataaaattagtttac 11903623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 52819771 - 52820152
Alignment:
Q  19 tggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttgtcacattctttg 118  Q
    ||||||||||||||| |||||  | ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||      
T  52819771 tggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttca 52819870  T
Q  119 aaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttg 218  Q
     |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |  | ||| |  ||||| | ||| ||||| |    
T  52819871 taatgcttcttagaagcatatgcgaatggcttagccttgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttag 52819970  T
Q  219 taggtatattgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtggaaccatatttgacatagtcaaagtccttaactgtgatggc 318  Q
    ||||||| |||||||| ||  | |||||||||||||||||    || ||||||||    ||||||||||| ||||||| |||||    || |||||||||    
T  52819971 taggtatgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggc 52820070  T
Q  319 atactttccattgttcttagttttaccataagccttaacgattttgcttccggctttgcatgttacctcaacaacagcacct 400  Q
    ||||||||||||  ||||||||||||| |||||||| | ||| || ||||| ||||||||| | ||||||||||||||||||    
T  52820071 atactttccattactcttagttttaccgtaagccttgatgatgttccttccagctttgcatttgacctcaacaacagcacct 52820152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 11881810 - 11881719
Alignment:
Q  1 aggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  11881810 aggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11881719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 11891044 - 11890953
Alignment:
Q  1 aggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    |||||||||  |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11891044 aggtgaatagtaatggactggcggaggtggggagttgtacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11890953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 11891172 - 11891085
Alignment:
Q  5 gaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  11891172 gaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 11904138 - 11904048
Alignment:
Q  2 ggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  11904138 ggtgaataataatggactggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11904048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 11881938 - 11881851
Alignment:
Q  5 gaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  11881938 gaataataatggaccggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 11881677 - 11881587
Alignment:
Q  2 ggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  11881677 ggtgaataataatggaccggtggagggggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 11904270 - 11904180
Alignment:
Q  2 ggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||    
T  11904270 ggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 11904402 - 11904312
Alignment:
Q  2 ggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||    
T  11904402 ggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 11904534 - 11904444
Alignment:
Q  2 ggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||    
T  11904534 ggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 11904666 - 11904576
Alignment:
Q  2 ggtgaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||    
T  11904666 ggtgaataataatggaccggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 11904795 - 11904708
Alignment:
Q  5 gaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtg 92  Q
    |||||| |||||||||||||||| |||||||||||||| ||||| ||||  |||||||||||||||||||||||||| ||||||||||    
T  11904795 gaataataatggactggtggaggaggtgagttgtacttataaaccggtgcaggaggtggaggtgatttgtagtagtatggagttggtg 11904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 52819603 - 52819665
Alignment:
Q  19 tggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagta 81  Q
    ||||||||||||||| ||||||||||||| |||||  ||||| |||||||| |||||||||||    
T  52819603 tggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagta 52819665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 52819193 - 52819254
Alignment:
Q  5 gaataagaatggactggtggaggtggtgagttgtacttgtaaactggtgagggaggtggagg 66  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||  ||||| |||||    
T  52819193 gaataataatggacaggtggaggtggtgacttgtacttgtaaactggtgttggaggaggagg 52819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 52819283 - 52819338
Alignment:
Q  23 ggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagta 78  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||||| ||||||||    
T  52819283 ggaggtggtgaattgtacttgtaaactggtgttggaggaggaggtgacttgtagta 52819338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 11882710 - 11882673
Alignment:
Q  49 tggtgagggaggtggaggtgatttgtagtagtaaggag 86  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  11882710 tggtgagggaggtggaggtgatttgtaatagtaaggag 11882673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 52819400 - 52819461
Alignment:
Q  20 ggtggaggtggtgagttgtacttgtaaactggtgagggaggtggaggtgatttgtagtagta 81  Q
    |||||||||||||| ||||| |||||||||||||  ||||| || ||||| |||||||||||    
T  52819400 ggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagta 52819461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 11882662 - 11882625
Alignment:
Q  49 tggtgagggaggtggaggtgatttgtagtagtaaggag 86  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  11882662 tggtgagggaggtggaggtgatttgtaatagtagggag 11882625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 11891896 - 11891859
Alignment:
Q  49 tggtgagggaggtggaggtgatttgtagtagtaaggag 86  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  11891896 tggtgagggaggtggaggtgatttgtaatagtagggag 11891859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 11879659 - 11879623
Alignment:
Q  50 ggtgagggaggtggaggtgatttgtagtagtaaggag 86  Q
    |||||||| |||||||| |||||||||||||||||||    
T  11879659 ggtgagggtggtggaggagatttgtagtagtaaggag 11879623  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 12163348 - 12163312
Alignment:
Q  17 actggtggaggtggtgagttgtacttgtaaactggtg 53  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  12163348 actggtggaggaggtgacttgtacttgtaaactggtg 12163312  T

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