View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18025_low_7 (Length: 541)

Name: NF18025_low_7
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18025_low_7
NF18025_low_7
[»] chr6 (24 HSPs)
chr6 (219-385)||(18367792-18367957)
chr6 (223-387)||(16488532-16488690)
chr6 (219-392)||(16766645-16766818)
chr6 (265-385)||(9107354-9107474)
chr6 (264-322)||(26562707-26562765)
chr6 (296-385)||(8776988-8777077)
chr6 (241-381)||(8365479-8365619)
chr6 (280-384)||(9027134-9027238)
chr6 (261-385)||(10294062-10294186)
chr6 (264-322)||(9617452-9617510)
chr6 (222-275)||(12696383-12696436)
chr6 (219-322)||(10339063-10339167)
chr6 (330-381)||(853908-853959)
chr6 (330-385)||(7938071-7938126)
chr6 (271-322)||(8931592-8931643)
chr6 (219-278)||(34595185-34595244)
chr6 (280-322)||(9025493-9025535)
chr6 (335-392)||(426568-426625)
chr6 (281-322)||(7265593-7265634)
chr6 (261-322)||(9195734-9195795)
chr6 (282-372)||(19044432-19044522)
chr6 (260-320)||(5970087-5970147)
chr6 (260-320)||(8714000-8714060)
chr6 (286-322)||(11591875-11591911)
[»] chr5 (23 HSPs)
chr5 (219-385)||(6401453-6401619)
chr5 (223-387)||(21814220-21814378)
chr5 (259-385)||(21522705-21522831)
chr5 (259-385)||(21533271-21533397)
chr5 (219-385)||(21541985-21542151)
chr5 (263-381)||(37328826-37328944)
chr5 (263-385)||(41995426-41995546)
chr5 (265-322)||(3966521-3966578)
chr5 (261-322)||(41091237-41091298)
chr5 (260-303)||(6418069-6418112)
chr5 (259-305)||(11685974-11686019)
chr5 (241-322)||(18592091-18592172)
chr5 (219-320)||(39698561-39698662)
chr5 (336-381)||(42469180-42469225)
chr5 (330-385)||(15382432-15382487)
chr5 (227-322)||(19453012-19453107)
chr5 (261-385)||(19579656-19579780)
chr5 (275-322)||(23015983-23016030)
chr5 (219-322)||(30098344-30098447)
chr5 (227-278)||(30098995-30099046)
chr5 (295-385)||(6770498-6770588)
chr5 (271-373)||(22423802-22423904)
chr5 (262-306)||(12264810-12264854)
[»] chr4 (13 HSPs)
chr4 (219-373)||(5414110-5414264)
chr4 (56-163)||(32835418-32835524)
chr4 (234-319)||(46083944-46084029)
chr4 (219-322)||(30982816-30982919)
chr4 (221-322)||(903940-904041)
chr4 (259-320)||(22234868-22234929)
chr4 (249-322)||(38148693-38148766)
chr4 (289-392)||(36635272-36635375)
chr4 (264-322)||(40742609-40742667)
chr4 (252-305)||(19500829-19500882)
chr4 (259-322)||(13134468-13134531)
chr4 (330-385)||(35158034-35158089)
chr4 (330-384)||(23293035-23293089)
[»] scaffold0623 (1 HSPs)
scaffold0623 (219-322)||(5934-6037)
[»] chr1 (25 HSPs)
chr1 (219-348)||(25934608-25934737)
chr1 (287-385)||(10577741-10577839)
chr1 (260-322)||(44482248-44482310)
chr1 (275-392)||(1486703-1486820)
chr1 (261-322)||(25361904-25361965)
chr1 (219-392)||(47989446-47989618)
chr1 (259-322)||(34371731-34371794)
chr1 (219-377)||(40917714-40917870)
chr1 (237-322)||(36906015-36906100)
chr1 (241-320)||(9828064-9828143)
chr1 (260-362)||(34315690-34315792)
chr1 (288-385)||(398772-398869)
chr1 (290-358)||(12443469-12443537)
chr1 (253-320)||(28273060-28273127)
chr1 (240-322)||(6414961-6415042)
chr1 (241-322)||(27471526-27471607)
chr1 (281-322)||(30749858-30749899)
chr1 (281-322)||(30771309-30771350)
chr1 (219-320)||(31694648-31694749)
chr1 (260-320)||(5944303-5944363)
chr1 (260-320)||(9629879-9629939)
chr1 (219-271)||(10577684-10577736)
chr1 (264-320)||(15449215-15449271)
chr1 (344-392)||(18190163-18190211)
chr1 (262-322)||(21038101-21038161)
[»] chr2 (16 HSPs)
chr2 (235-351)||(36096329-36096445)
chr2 (234-384)||(34784935-34785085)
chr2 (11-70)||(19350686-19350745)
chr2 (219-306)||(35056902-35056989)
chr2 (262-384)||(18054784-18054907)
chr2 (219-278)||(24009346-24009405)
chr2 (237-359)||(12668379-12668501)
chr2 (259-320)||(30717508-30717569)
chr2 (281-362)||(20242727-20242808)
chr2 (249-319)||(28524447-28524517)
chr2 (220-322)||(32749764-32749866)
chr2 (263-320)||(37419763-37419820)
chr2 (237-322)||(44860338-44860423)
chr2 (344-392)||(40361817-40361865)
chr2 (219-320)||(11223802-11223902)
chr2 (281-322)||(37411244-37411285)
[»] chr8 (18 HSPs)
chr8 (219-322)||(26902113-26902216)
chr8 (219-321)||(34450970-34451077)
chr8 (219-385)||(29510242-29510408)
chr8 (259-392)||(2572034-2572167)
chr8 (259-384)||(24362179-24362305)
chr8 (241-357)||(15816089-15816205)
chr8 (261-385)||(22651931-22652055)
chr8 (281-385)||(43737811-43737917)
chr8 (335-392)||(24857957-24858014)
chr8 (281-322)||(34897103-34897144)
chr8 (261-320)||(11927066-11927125)
chr8 (259-322)||(12570487-12570549)
chr8 (219-278)||(43737760-43737819)
chr8 (282-320)||(3951537-3951575)
chr8 (281-322)||(4786338-4786379)
chr8 (330-382)||(24196646-24196698)
chr8 (219-348)||(29447048-29447177)
chr8 (261-305)||(29447479-29447523)
[»] scaffold0116 (1 HSPs)
scaffold0116 (281-385)||(9853-9957)
[»] chr7 (16 HSPs)
chr7 (241-385)||(24339597-24339741)
chr7 (219-306)||(25822689-25822776)
chr7 (249-306)||(4794923-4794980)
chr7 (259-348)||(6630890-6630979)
chr7 (259-322)||(26329360-26329423)
chr7 (260-322)||(32308138-32308200)
chr7 (259-320)||(11665418-11665479)
chr7 (260-320)||(15902842-15902902)
chr7 (280-381)||(27945000-27945101)
chr7 (263-385)||(9408316-9408445)
chr7 (280-322)||(22602709-22602751)
chr7 (335-385)||(23859985-23860035)
chr7 (336-385)||(1433409-1433458)
chr7 (281-322)||(9482952-9482993)
chr7 (287-385)||(21140988-21141086)
chr7 (271-320)||(21560523-21560572)
[»] scaffold0306 (1 HSPs)
scaffold0306 (219-381)||(13359-13516)
[»] scaffold0152 (1 HSPs)
scaffold0152 (219-381)||(21811-21968)
[»] chr3 (18 HSPs)
chr3 (330-385)||(16000065-16000120)
chr3 (280-322)||(14028025-14028067)
chr3 (260-322)||(16192729-16192791)
chr3 (281-322)||(13845525-13845566)
chr3 (259-348)||(14209105-14209194)
chr3 (330-385)||(10335335-10335390)
chr3 (260-348)||(34910309-34910397)
chr3 (281-322)||(2941576-2941617)
chr3 (266-306)||(8039820-8039860)
chr3 (411-451)||(46299764-46299804)
chr3 (336-383)||(4991022-4991069)
chr3 (219-278)||(13845474-13845533)
chr3 (259-385)||(750596-750723)
chr3 (335-385)||(7171457-7171507)
chr3 (281-348)||(35222930-35222997)
chr3 (219-320)||(4987229-4987330)
chr3 (281-322)||(25093520-25093561)
chr3 (474-502)||(46300108-46300136)
[»] scaffold0053 (1 HSPs)
scaffold0053 (330-392)||(8746-8808)
[»] scaffold0003 (1 HSPs)
scaffold0003 (241-376)||(241558-241693)
[»] scaffold0044 (1 HSPs)
scaffold0044 (241-322)||(53198-53279)
[»] scaffold0279 (1 HSPs)
scaffold0279 (240-304)||(17839-17903)
[»] scaffold0123 (1 HSPs)
scaffold0123 (242-322)||(44486-44566)
[»] scaffold0652 (1 HSPs)
scaffold0652 (281-385)||(462-566)
[»] scaffold0036 (1 HSPs)
scaffold0036 (260-322)||(9726-9788)
[»] scaffold0171 (1 HSPs)
scaffold0171 (263-320)||(23531-23588)
[»] scaffold0376 (1 HSPs)
scaffold0376 (259-303)||(6349-6393)
[»] scaffold0008 (1 HSPs)
scaffold0008 (259-384)||(263350-263475)
[»] scaffold0021 (1 HSPs)
scaffold0021 (335-392)||(130430-130487)
[»] scaffold0136 (1 HSPs)
scaffold0136 (260-320)||(3828-3888)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 219 - 385
Target Start/End: Complemental strand, 18367957 - 18367792
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||| ||||||| ||||||||||||||||   |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||    
T  18367957 acggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcattttgtgatt 18367858  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||       |||| ||||||||||||| ||| ||| |||||| | ||||||||||||||||||||    
T  18367857 ttctaaaaaaattagctgtgtcggcgtgt-cgtgtccatgtcgtgtccggtgtccgtgtccgtatcc 18367792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 223 - 387
Target Start/End: Original strand, 16488532 - 16488690
Alignment:
Q  223 acattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  16488532 acattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgattttct 16488631  T
Q  323 nnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccat 387  Q
           |||| ||||||||||||      ||| |||||||| |||||||||||||||| |||||    
T  16488632 aaaaaaattagctgtgtcggcgtg------tccatgtcgtttccggtgtccgtgtccgtgtccat 16488690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 392
Target Start/End: Complemental strand, 16766818 - 16766645
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    |||||||||| |  ||| ||| ||||||| ||||| ||  ||||| |||||||||||||| |||||| |||||| | ||||||||||| ||| |||||||    
T  16766818 acggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgatt 16766719  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    || |       |||| |||||||||||||| || ||| |||||| | |||||||||||||||||||||| ||||    
T  16766718 ttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccatgcttc 16766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 385
Target Start/End: Original strand, 9107354 - 9107474
Alignment:
Q  265 gtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttt 364  Q
    |||||||||||||| |||||| |||||| | ||||||||||| ||||||||||||| |       |||| |||||||||||||  || |||||||||| |    
T  9107354 gtgtccgacaccgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgt 9107453  T
Q  365 tcggtgtccgtgtccgtatcc 385  Q
     ||||||||||||| ||||||    
T  9107454 ccggtgtccgtgtcagtatcc 9107474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 26562765 - 26562707
Alignment:
Q  264 cgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  26562765 cgtgttcgacaccgacacgacatcgacacatataattacactgaattatgtgattttct 26562707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 296 - 385
Target Start/End: Original strand, 8776988 - 8777077
Alignment:
Q  296 taattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||||||| ||||||||||||| |       ||||||||||||||||||| || |||||||||| | || |||||||||||||||||    
T  8776988 taattacactgaattttgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatcc 8777077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 381
Target Start/End: Original strand, 8365479 - 8365619
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtc 340  Q
    ||||||| ||||| ||  |||||||||||||| ||||| |||||| |||||| | ||||||||| | ||| |||||| || |       |||||||||||    
T  8365479 gtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaattatgtgatattttcaaattattagttgtgtc 8365578  T
Q  341 ggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 381  Q
    |||||||| || |||||||||| |  ||||||||| |||||    
T  8365579 ggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgt 8365619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 384
Target Start/End: Complemental strand, 9027238 - 9027134
Alignment:
Q  280 acgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtcc 379  Q
    |||||| |||||||||||||||||| | ||| ||||||| |||       ||||  ||||||||||||| || |||||||||| | ||| ||||||||||    
T  9027238 acgacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgtcc 9027139  T
Q  380 gtatc 384  Q
    |||||    
T  9027138 gtatc 9027134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 385
Target Start/End: Complemental strand, 10294186 - 10294062
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtc 360  Q
    |||||||||||||||| | |||||| ||||||||||||||||| || | | || |||| |||       ||||  || ||||| |||| |||||||||||    
T  10294186 tgtcgtgtccgacaccaacacgacaccgacacatataattacattgaaatatgcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtc 10294087  T
Q  361 gttttcggtgtccgtgtccgtatcc 385  Q
    || | |||||| |||||||||||||    
T  10294086 gtgtccggtgttcgtgtccgtatcc 10294062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 9617510 - 9617452
Alignment:
Q  264 cgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||||||  |||||| ||||||||||||||||| || ||| |||||||||||    
T  9617510 cgtgtccgacaccgcgacgacaccgacacatataattacattgaattatgtgattttct 9617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 12696436 - 12696383
Alignment:
Q  222 gacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacac 275  Q
    |||| ||||| ||||||||||||||| ||||||||  |||||||||||||||||    
T  12696436 gacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 10339063 - 10339167
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataatt-acactgcattttgtgat 317  Q
    ||||||| ||||  ||| ||| ||||||| ||||| ||   ||||||||||||||||||| ||| ||  ||||||||||||| |||||| ||| ||||||    
T  10339063 acggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacggcactgacacatataattaacactgaattatgtgat 10339162  T
Q  318 tttct 322  Q
    |||||    
T  10339163 tttct 10339167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 381
Target Start/End: Original strand, 853908 - 853959
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 381  Q
    ||||||||||||||||||| | ||||||||||| | |||||||||| |||||    
T  853908 ttagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgt 853959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 385
Target Start/End: Complemental strand, 7938126 - 7938071
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    |||| |||||||||||||| || ||| |||||| | ||||||||||||||||||||    
T  7938126 ttagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatcc 7938071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 8931592 - 8931643
Alignment:
Q  271 gacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||| |||||||||||||||||||||| |||| ||| ||| |||||||    
T  8931592 gacaccgacacgacatcgacacatataattatactgaattatgttattttct 8931643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 34595244 - 34595185
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 278  Q
    ||||||| ||||  ||| ||||||||||| ||||||||  ||||||||||||||||||||    
T  34595244 acggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccga 34595185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 9025493 - 9025535
Alignment:
Q  280 acgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||| |||||||||||||||||||| ||| |||||||||||    
T  9025493 acgacaccgacacatataattacactgaattatgtgattttct 9025535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 426568 - 426625
Alignment:
Q  335 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    |||||||||||||| || |||||||||| | |||| |||||||| |||||||| ||||    
T  426568 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatgcttc 426625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 7265593 - 7265634
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||||||||||||||||||| ||| |||||||||||    
T  7265593 cgacaccgacacatataattacactgaattatgtgattttct 7265634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 9195734 - 9195795
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||| |||||| | |||||| |||||||||||||||||||  ||| ||| |||||||    
T  9195734 tgtcgtgtcagacacctacacgacaccgacacatataattacactaaattatgtcattttct 9195795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 372
Target Start/End: Complemental strand, 19044522 - 19044432
Alignment:
Q  282 gacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtc 372  Q
    |||| ||||||||||||| |||||| ||| |||||| ||||       ||||| ||||||||||||| || ||| |||||| |||||||||    
T  19044522 gacaccgacacatataataacactgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgtccatgtcgtattcggtgtc 19044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 5970087 - 5970147
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||||||||||| |||||| | |||  | ||||||||||| ||| |||||||||    
T  5970087 gtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgatttt 5970147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 8714060 - 8714000
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||||||||||| |||||| | |||  | ||||||||||| ||| |||||||||    
T  8714060 gtgtcgtgtccgacaccgacacgacacccacatttgtaattacactgaattatgtgatttt 8714000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 11591875 - 11591911
Alignment:
Q  286 tcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  11591875 tcgacacatataattacactgaattatgtgattttct 11591911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 219 - 385
Target Start/End: Complemental strand, 6401619 - 6401453
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||| ||||||| || |||||||||||||  ||||||||||||||||| || |||||| |||||||||||||||||||| |||||||||||    
T  6401619 acggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtattttgtgatt 6401520  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||       ||||||||||||||||||| || |||||||||  | ||||||||||||| ||||||    
T  6401519 ttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatcc 6401453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 223 - 387
Target Start/End: Complemental strand, 21814378 - 21814220
Alignment:
Q  223 acattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  21814378 acattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgtgattttct 21814279  T
Q  323 nnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccat 387  Q
           |||| ||||||||||||      ||| |||||||| |||||||||||||||| |||||    
T  21814278 aaaaaaattagctgtgtcggcgtg------tccatgtcgtttccggtgtccgtgtccgtgtccat 21814220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 385
Target Start/End: Complemental strand, 21522831 - 21522705
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtg 358  Q
    |||||||||||||||||||| |||||| |||||  | ||||||||||| ||| ||| ||||| |       |||| |||||||||||||| || ||||||    
T  21522831 cgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtg 21522732  T
Q  359 tcgttttcggtgtccgtgtccgtatcc 385  Q
    |||| | ||||| ||||||||||||||    
T  21522731 tcgtgtccggtgaccgtgtccgtatcc 21522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 385
Target Start/End: Complemental strand, 21533397 - 21533271
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtg 358  Q
    |||||||||||||||||||| |||||| |||||  | ||||||||||| ||| ||| ||||| |       |||| |||||||||||||| || ||||||    
T  21533397 cgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtg 21533298  T
Q  359 tcgttttcggtgtccgtgtccgtatcc 385  Q
    |||| | ||||| ||||||||||||||    
T  21533297 tcgtgtccggtgaccgtgtccgtatcc 21533271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 385
Target Start/End: Complemental strand, 21542151 - 21541985
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||||||||| |||  || ||||||| ||||| ||  |||||||||||||||||||| |||||| |||||| | ||||||||||| ||| ||| ||     
T  21542151 acggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgttatc 21542052  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    || |       |||||||||||||| ||||  | || ||||||| |  |||||||||||||||||||    
T  21542051 tttttaaattattagttgtgtcggcatgtcaatgtctgtgtcgtgtctggtgtccgtgtccgtatcc 21541985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 263 - 381
Target Start/End: Original strand, 37328826 - 37328944
Alignment:
Q  263 tcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgt 362  Q
    |||||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||         || | |||||||| || || || ||||||||||    
T  37328826 tcgtgtccgacaccgacacgacaccgacacatgtaattacactgaattttgtgatttttacaaattatttgctgtgtcggtgtatcagtgtccgtgtcgt 37328925  T
Q  363 tttcggtgtccgtgtccgt 381  Q
     ||||||||||||||||||    
T  37328926 gttcggtgtccgtgtccgt 37328944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 263 - 385
Target Start/End: Complemental strand, 41995546 - 41995426
Alignment:
Q  263 tcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgt 362  Q
    |||||||||||||||||||| || |||||| ||  |||||| || ||| ||||||||| |       ||||||||||||||||||| || || |||||||    
T  41995546 tcgtgtccgacaccgatacggcaccgacactta--attacattgaattatgtgattttttcgaattattagttgtgtcggcgtgtcagtgtctgtgtcgt 41995449  T
Q  363 tttcggtgtccgtgtccgtatcc 385  Q
     | | ||||||||||||||||||    
T  41995448 atccagtgtccgtgtccgtatcc 41995426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 3966578 - 3966521
Alignment:
Q  265 gtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||| || |||||| |||||||||||||||||||| ||| |||||||||||    
T  3966578 gtgtccgacactgacacgacaccgacacatataattacactgaattgtgtgattttct 3966521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 41091237 - 41091298
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| ||||||||  || ||||||||||||||||||||||||||| ||| |||||||||||    
T  41091237 tgtcgcgtccgacattgacacgacatcgacacatataattacactgaattatgtgattttct 41091298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 6418112 - 6418069
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattaca 303  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  6418112 gtgtcgtgttcgacaccgatacgacgtcgacacatataattaca 6418069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 11686019 - 11685974
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 305  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  11686019 cgtgtcgtgtccgacaccga-acgacaccgacacatataattacact 11685974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 18592172 - 18592091
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||  |||||||  ||||| |||||||||||||| |||||| || |||||||||||||| || ||| ||| |||||||    
T  18592172 gtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgtaattttct 18592091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 39698662 - 39698561
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||  ||| ||| ||||| | ||||| ||| | |||||||||||||||||| ||||||  ||||| | ||||||||||| ||| |||||||    
T  39698662 acggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgatt 39698563  T
Q  319 tt 320  Q
    ||    
T  39698562 tt 39698561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 42469225 - 42469180
Alignment:
Q  336 gtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 381  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||    
T  42469225 gtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgt 42469180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 385
Target Start/End: Complemental strand, 15382487 - 15382432
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    |||| ||||||||||||||  | |||||||||| | ||||||||||||||||||||    
T  15382487 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatcc 15382432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 19453012 - 19453107
Alignment:
Q  227 tccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| ||||||| || || |||||| |||   |||||||||||||||  || |||||| ||||||||||||||||  |  |||||||||||||||    
T  19453012 tccttggataaggcgtatctccgtgtgagacatgtgtcgtgtccgacattgacacgacaccgacacatataattacggtatattttgtgattttct 19453107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 385
Target Start/End: Complemental strand, 19579780 - 19579656
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtc 360  Q
    ||||||||||||||| || |||||| |||||| | ||||| ||||  ||| |||||||||||       |||| ||||||||||| || || |||||||     
T  19579780 tgtcgtgtccgacactgacacgacaccgacacttgtaattgcactaaattatgtgattttctcaaattattagctgtgtcggcgtatcagtgtccgtgtt 19579681  T
Q  361 gttttcggtgtccgtgtccgtatcc 385  Q
    || | ||||||| |||| |||||||    
T  19579680 gtatccggtgtcggtgtacgtatcc 19579656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 23015983 - 23016030
Alignment:
Q  275 ccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||| |||||||||| ||||||||||||| ||| |||||||||||    
T  23015983 ccgatacaacatcgacacctataattacactgaattatgtgattttct 23016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 30098447 - 30098344
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||||||||  ||| ||||||||||  ||||| ||  ||||||||||||||||| ||  ||| | |||||  |||||||||| || ||| |||||||    
T  30098447 acggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaattatgtgatt 30098348  T
Q  319 ttct 322  Q
    ||||    
T  30098347 ttct 30098344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 30098995 - 30099046
Alignment:
Q  227 tccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 278  Q
    ||||| ||||||| ||||||||||||||||  |||||||| |||||||||||    
T  30098995 tccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccga 30099046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 385
Target Start/End: Complemental strand, 6770588 - 6770498
Alignment:
Q  295 ataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    |||| ||||||| ||| |||||||||||       ||||||||||| | ||||| || |||||||| | |||||||||||| |||||||||    
T  6770588 ataagtacactgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtcatgttcggtgtccgtatccgtatcc 6770498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 22423802 - 22423904
Alignment:
Q  271 gacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtg 370  Q
    |||||||| |||||| ||||| ||||||||| | || ||| |||||||||||       ||||| ||||| | ||||| ||||||||||||| |||| ||    
T  22423802 gacaccgacacgacaccgacatatataattatattgaattatgtgattttctcaaattattagtagtgtcagggtgtcagtatccgtgtcgtgttcgatg 22423901  T
Q  371 tcc 373  Q
    |||    
T  22423902 tcc 22423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 12264810 - 12264854
Alignment:
Q  262 gtcgtgtccgacaccgatacgacatcgacacatataattacactg 306  Q
    ||||| || |||||||||| ||||| |||||||||||||||||||    
T  12264810 gtcgtatctgacaccgatatgacattgacacatataattacactg 12264854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 219 - 373
Target Start/End: Original strand, 5414110 - 5414264
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||| ||||||||||||||| ||||||||  ||||||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||    
T  5414110 acggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcattttgtgatt 5414209  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtcc 373  Q
    ||||       |||| ||||||||||||||||| |||||||||| | ||||||||    
T  5414210 ttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgtcgtgtccggtgtcc 5414264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 32835418 - 32835524
Alignment:
Q  56 tattttgcatgattttcaaatattttgtgttgttaatttaacttttagctaattatttagttacataaactaattgtttagctgaattgctttgttttat 155  Q
    ||||||| || ||||| |||||| ||| |||||||||||||||||||||||||||||||  || |  ||||| |||| ||||||||||||||| |||| |    
T  32835418 tattttgaataattttaaaatatattgcgttgttaatttaacttttagctaattattta-ataaagtaactatttgtctagctgaattgctttctttttt 32835516  T
Q  156 ggcaaaat 163  Q
    ||||||||    
T  32835517 ggcaaaat 32835524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 46083944 - 46084029
Alignment:
Q  234 ataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattt 319  Q
    |||||| ||||||||| ||||||  |||||||||||||| || || |||||| |||||||||||||||||||  ||| ||||||||    
T  46083944 ataaggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacactagattatgtgattt 46084029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 30982816 - 30982919
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| || || ||| ||| ||||||| ||||| ||  ||||||||||| |||||||| |||||| |||||| ||||||||||||| | | |||||||    
T  30982816 acggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgatt 30982915  T
Q  319 ttct 322  Q
    ||||    
T  30982916 ttct 30982919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 904041 - 903940
Alignment:
Q  221 ggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||| ||| ||| || |||||||| ||||| ||  | |||||||||| |||||||||||| |  || |||||||||||||||| ||| |||||||||    
T  904041 ggacatttcttggattagatgtgtcccagtgtcggacacatgtcgtgtccaacaccgatacgatactgatacatataattacactgaattatgtgatttt 903942  T
Q  321 ct 322  Q
    ||    
T  903941 ct 903940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 22234868 - 22234929
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||| |||||||| |||||| ||||||||| |||||||||| ||| |||||||||    
T  22234868 cgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaattatgtgatttt 22234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 38148693 - 38148766
Alignment:
Q  249 gtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||| |||||||||||| ||||| | ||||||||||||  || |||||||||| ||| |||||||||||    
T  38148693 gtgtcagatacgtgtcgtgtccaacaccaacacgacatcgacatttaaaattacactgaattatgtgattttct 38148766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 392
Target Start/End: Complemental strand, 36635375 - 36635272
Alignment:
Q  289 acacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccatt 388  Q
    |||||||||||||||||| ||| |||||||||||       ||||| |||| |||||||| || |||| ||||| | ||||||| |||||| |||||||     
T  36635375 acacatataattacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtctgtgtccttatccatg 36635276  T
Q  389 cttc 392  Q
    ||||    
T  36635275 cttc 36635272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 40742667 - 40742609
Alignment:
Q  264 cgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||| |||||||| ||||||||||||||||||||||||||  ||| | |||||||||    
T  40742667 cgtgtctgacaccgacacgacatcgacacatataattacactagattatatgattttct 40742609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 19500829 - 19500882
Alignment:
Q  252 tcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 305  Q
    ||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||    
T  19500829 tcagaggcgtgtcgtgtccgacaccgacacgacaccatcacatataattacact 19500882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 13134531 - 13134468
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||| ||||  ||| ||||||||||||||||||||||||||  ||| |||||||||||    
T  13134531 cgtgttgtgttcgacgtcgacacgacatcgacacatataattacactaaattatgtgattttct 13134468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 35158034 - 35158089
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||| ||||||||||| || ||||||| || | ||||||||||||||||||||    
T  35158034 ttagttgcgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgtccgtatcc 35158089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 384
Target Start/End: Original strand, 23293035 - 23293089
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 384  Q
    |||| ||||||||||||||  | |||||||||| | |||||||||||||||||||    
T  23293035 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatc 23293089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 5934 - 6037
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||| ||||||| ||||| | ||||||||  |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5934 acggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattacactgcattttgtgatt 6033  T
Q  319 ttct 322  Q
    ||||    
T  6034 ttct 6037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 348
Target Start/End: Complemental strand, 25934737 - 25934608
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||| ||||||| || |||||||||||||  |||||||||||||||||||| |||| | |||||||||||||||||||| |||||||||||    
T  25934737 acggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactgtattttgtgatt 25934638  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtc 348  Q
    ||||       |||| ||||||||||||||    
T  25934637 ttctagaaaatttagctgtgtcggcgtgtc 25934608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 10577741 - 10577839
Alignment:
Q  287 cgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||||||||||||||||||||||||||||||||       |||| |||||||||||||| || |||||||||| | ||||||||||||||||||||    
T  10577741 cgacacatataattacactgcattttgtgattttctaaaaaaattagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 10577839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 44482310 - 44482248
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||    
T  44482310 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatgtgattttct 44482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 392
Target Start/End: Original strand, 1486703 - 1486820
Alignment:
Q  275 ccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccg 374  Q
    |||| |||||| |||||| ||||||||||||| ||| ||||||||| |       |||| |||||| ||||||| ||||||||||||| | |||| ||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccg 1486802  T
Q  375 tgtccgtatccattcttc 392  Q
    ||||||||||||| ||||    
T  1486803 tgtccgtatccatgcttc 1486820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 25361965 - 25361904
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||| ||| |||||||||||    
T  25361965 tgtcgtgtccgacaccgacacgacactgacacatataattacactgaattatgtgattttct 25361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 219 - 392
Target Start/End: Complemental strand, 47989618 - 47989446
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||  ||| ||| |||||||  |||||||   ||||||||||||||||||| |||||| |||||| | ||||||||||| ||| |||||||    
T  47989618 acggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgatt 47989519  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    || |       ||| ||||||||||||||| || || ||||||| |  ||| |||||||| |||||||| ||||    
T  47989518 tttttaaattatta-ttgtgtcggcgtgtcagtgtctgtgtcgtgtctggtatccgtgtctgtatccatgcttc 47989446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 34371794 - 34371731
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||| ||||||||| | |||||| |||||||||||||||||||| ||| |||||||||||    
T  34371794 cgtgtcgtatccgacaccaacacgacaccgacacatataattacactgaattatgtgattttct 34371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 219 - 377
Target Start/End: Complemental strand, 40917870 - 40917714
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||  ||| ||| ||||||| ||||| ||  |||||||||||| ||||||| |||||| ||| || | ||||||||||  |||  ||||||    
T  40917870 acggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgacaccgagacttgtaattacacttaatt--gtgatt 40917773  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgt 377  Q
    || |       |||| |||||||||||||| ||||||||||||| | ||||||||||||    
T  40917772 ttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgt 40917714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 36906100 - 36906015
Alignment:
Q  237 aggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||| |||||||| ||| |||||||||||||| || || ||  | |||||||||||||| ||| ||| |||||||||||    
T  36906100 aggtgtgtcccagtgtcagacgcgggtcgtgtccgacactgacacaacgccaacacatataattactctgaattatgtgattttct 36906015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 9828143 - 9828064
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||| ||||| ||  ||||||||||| ||||| || |||||| ||||||||| |||||||||| ||| |||||||||    
T  9828143 gtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgatttt 9828064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 260 - 362
Target Start/End: Complemental strand, 34315792 - 34315690
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgt 359  Q
    ||||||||| |||||||||||||| | |||||||||||||||||| | ||| |||  |||| |       |||| ||||||||| |||| ||||||||||    
T  34315792 gtgtcgtgttcgacaccgatacgataccgacacatataattacaccgaattatgtagttttttaaaaaatttagctgtgtcggcatgtcagtatccgtgt 34315693  T
Q  360 cgt 362  Q
    |||    
T  34315692 cgt 34315690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 385
Target Start/End: Original strand, 398772 - 398869
Alignment:
Q  288 gacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||| ||||||||||||| ||| ||||||||| |       ||||  ||||||||||||| || |||||||||| | ||||||||| ||||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatcc 398869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 12443469 - 12443537
Alignment:
Q  290 cacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtg 358  Q
    |||||| |||||||||| ||| |||||||||||       |||| ||||||||||||||||||||||||    
T  12443469 cacatacaattacactgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtatccgtg 12443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 28273060 - 28273127
Alignment:
Q  253 cagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||| |||||||||||||||| ||||| |||| |||||| | ||||||||||| ||| | |||||||    
T  28273060 cagatacgtgtcgtgtccgacatcgataggacaccgacacttgtaattacactgaattatatgatttt 28273127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 6414961 - 6415042
Alignment:
Q  240 tgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||| | ||||||||  |||||||||||||||| ||| | |||| |||||||| |||||| |||| ||| |||||||||||    
T  6414961 tgtgtcgcggtgtcagacacgtgtcgtgtccgacatcga-atgacaccgacacatctaattaaactgtattatgtgattttct 6415042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 27471526 - 27471607
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||| ||||| ||  |||||||| ||| ||||||||| |||| | |||||| ||||||||||| ||| |||| ||||||    
T  27471526 gtgtcccggtgtcggacacgtgtcgtatccaacaccgatatgacaccaacacatgtaattacactgaattatgtgcttttct 27471607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 30749899 - 30749858
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||||||||||||||||||| ||| |||||||||||    
T  30749899 cgacaccgacacatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 30771350 - 30771309
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||||||||||||||||||| ||| |||||||||||    
T  30771350 cgacaccgacacatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 31694648 - 31694749
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| |||| |||| ||| |||| || |||||  ||  |||| |||||||||||||| |||||| |||||| | |||||| |||| ||| |||||||    
T  31694648 acggacactcctcagattaggcgtgttccggtgtcgaatatgtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgtgatt 31694747  T
Q  319 tt 320  Q
    ||    
T  31694748 tt 31694749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 5944363 - 5944303
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    |||| ||||||| || ||| |||||| |||||| ||||||||||||| ||| |||||||||    
T  5944363 gtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaattatgtgatttt 5944303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 9629879 - 9629939
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||||||| ||| |||||| |||||| |||||| |||||| ||| | |||||||    
T  9629879 gtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgatttt 9629939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 10577684 - 10577736
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccg 271  Q
    ||||||| ||||| ||||||| ||||||||||||||||  || ||||||||||    
T  10577684 acggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccg 10577736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 15449215 - 15449271
Alignment:
Q  264 cgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||||||||||||||  ||||| | ||||||||||  ||| |||||||||    
T  15449215 cgtgtccgacaccgatacgacacagacacttgtaattacactaaattatgtgatttt 15449271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 18190163 - 18190211
Alignment:
Q  344 gtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    ||||| ||||||||||||| | |||||||| ||||||||||||| ||||    
T  18190163 gtgtcagtatccgtgtcgtgtccggtgtccatgtccgtatccatgcttc 18190211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 21038161 - 21038101
Alignment:
Q  262 gtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||||||||| ||||||  ||| ||||| ||||||||| ||| ||| |||||||    
T  21038161 gtcgtgtccgacaccgacacgacactgacgcatatgattacactgaattatgtaattttct 21038101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 235 - 351
Target Start/End: Original strand, 36096329 - 36096445
Alignment:
Q  235 taaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagt 334  Q
    ||||| ||||||||||||||||  |||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||       ||||     
T  36096329 taaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcattttgtgattttctaaaaaatttagc 36096428  T
Q  335 tgtgtcggcgtgtccgt 351  Q
    |||||||||||||||||    
T  36096429 tgtgtcggcgtgtccgt 36096445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 234 - 384
Target Start/End: Original strand, 34784935 - 34785085
Alignment:
Q  234 ataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttag 333  Q
    |||||| ||||||||||||||||   ||||||||||||| ||||| |||||| |||||||||||||||||||  ||| |||||||||||       ||||    
T  34784935 ataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaattatgtgattttctaaaaaaattag 34785034  T
Q  334 ttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 384  Q
    ||||||||| ||||| || |||||||||| |  || |||||||||||||||    
T  34785035 ttgtgtcggtgtgtcagtgtccgtgtcgtgtctggggtccgtgtccgtatc 34785085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 19350745 - 19350686
Alignment:
Q  11 cagagacattattgaacaagtttcaaattggtgaatatatttcattattttgcatgattt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19350745 cagagacattattgaacaagtttcaaattggtgaatatatttcattattctgcatgattt 19350686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 35056989 - 35056902
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 306  Q
    ||||||| |||| |||| ||| ||||  ||||||| ||  |||||||||||||||||||| |||||| ||||||||||||||||||||    
T  35056989 acggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactg 35056902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 384
Target Start/End: Original strand, 18054784 - 18054907
Alignment:
Q  262 gtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct-nnnnnnnttagttgtgtcggcgtgtccgtatccgtgtc 360  Q
    ||||||| ||||||||| |||||| | |||||||||||||||||||| |||||||||||||        |||| ||||||| |||||| || ||| ||||    
T  18054784 gtcgtgttcgacaccgacacgacaccaacacatataattacactgcagtttgtgattttctaaaaaaaattagctgtgtcgacgtgtcggtgtccctgtc 18054883  T
Q  361 gttttcggtgtccgtgtccgtatc 384  Q
    || | ||||||||||||| |||||    
T  18054884 gtgtccggtgtccgtgtctgtatc 18054907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 24009405 - 24009346
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 278  Q
    ||||||| ||||| ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24009405 acggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccga 24009346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 359
Target Start/End: Original strand, 12668379 - 12668501
Alignment:
Q  237 aggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttg 336  Q
    |||||||||||  |||||||| |||||||| ||| | ||||| |||||| |||||| ||||||||||||| ||| ||| ||||| |       ||||||     
T  12668379 aggtgtgtcccaatgtcagatacgtgtcgtatccaataccgacacgacaccgacacttataattacactgaattatgtcattttttcaaattattagtta 12668478  T
Q  337 tgtcggcgtgtccgtatccgtgt 359  Q
    |||||||||||| ||||| ||||    
T  12668479 tgtcggcgtgtcagtatctgtgt 12668501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 30717508 - 30717569
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    |||||||||||||||| ||| ||||||||||||| | ||||||||||| ||| |||||||||    
T  30717508 cgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgtgatttt 30717569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 20242727 - 20242808
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgt 362  Q
    ||||| |||||||||||||||||||| ||| |||||||||||       ||||||||||||||||||| || ||| ||||||    
T  20242727 cgacaccgacacatataattacactgaattatgtgattttctaaaaaaattagttgtgtcggcgtgtcagtgtccatgtcgt 20242808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 28524517 - 28524447
Alignment:
Q  249 gtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattt 319  Q
    ||||||||  ||||| |||||||||||| | || ||| |||||||||||||||||||| ||| ||||||||    
T  28524517 gtgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 32749764 - 32749866
Alignment:
Q  220 cggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattt 319  Q
    |||||| ||||||||||||| ||||||| ||||| ||  | ||||  |||||||| ||| ||||||  ||||| ||| ||||||||| ||| ||||||||    
T  32749764 cggacactccttagataaggcgtgtcccagtgtcggacacatgtcacgtccgacatcgacacgacactgacacttattattacactgaattatgtgattt 32749863  T
Q  320 tct 322  Q
    |||    
T  32749864 tct 32749866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 37419820 - 37419763
Alignment:
Q  263 tcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    |||||||||||||||| |||||| || ||| | ||||||||||| |||||||||||||    
T  37419820 tcgtgtccgacaccgacacgacaccggcacttgtaattacactgaattttgtgatttt 37419763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 322
Target Start/End: Complemental strand, 44860423 - 44860338
Alignment:
Q  237 aggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||||||  |||| ||  | |||||||||| ||||| | |||||| |||||||||||||||||||| ||| || ||||||||    
T  44860423 aggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaattatgcgattttct 44860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 40361817 - 40361865
Alignment:
Q  344 gtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||| ||||    
T  40361817 gtgtccgtatctgtgtcgtgttcggtatccgtgtccgtatccatgcttc 40361865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 11223802 - 11223902
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| |||| |||| ||| ||||||| ||||||||   ||||||||||||||||| | | |||| |||||| | ||||||||||| ||| ||| |||    
T  11223802 acggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaattatgttatt 11223900  T
Q  319 tt 320  Q
    ||    
T  11223901 tt 11223902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 37411244 - 37411285
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||||||||||| |||||| ||| |||||||||||    
T  37411244 cgacatcgacacatataatcacactgaattatgtgattttct 37411285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 26902113 - 26902216
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| |||| |||||||| ||||||||||| ||||  |||||||||||||||||  |||||||| |||||||||||||||||||| ||| |||||||    
T  26902113 acggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaattatgtgatt 26902212  T
Q  319 ttct 322  Q
    ||||    
T  26902213 ttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 34450970 - 34451077
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacat-----cgacacatataattacactgcattttg 313  Q
    ||||||| ||||| ||||||| ||||||||||||||||  |||||||||||||||||||| ||||||      |||||||||||||||||||||||||||    
T  34450970 acggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacgacacgacaccgacacatataattacactgcattttg 34451069  T
Q  314 tgattttc 321  Q
    ||||||||    
T  34451070 tgattttc 34451077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 385
Target Start/End: Original strand, 29510242 - 29510408
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||  ||| ||||||||||| ||||| ||  || ||||||||||||||||| || ||| |||||| | |||||| |||| |||||||||||    
T  29510242 acggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaattttgtgatt 29510341  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    || |       |||| |||||||||||||| || |||||||||| | |||||||| |||| ||||||    
T  29510342 ttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatcc 29510408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 259 - 392
Target Start/End: Original strand, 2572034 - 2572167
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtg 358  Q
    ||||||||||||||||| || |||||| |||||| | ||||||||||  ||| ||||||||| |       |||| ||||||| |||||| |||||||||    
T  2572034 cgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtg 2572133  T
Q  359 tcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    |||| | | |||||||||||||||||||| ||||    
T  2572134 tcgtgtccagtgtccgtgtccgtatccatgcttc 2572167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 24362179 - 24362305
Alignment:
Q  259 cgtgtcgtgtccg-acaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgt 357  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||| ||||||| |||       ||||  ||||||||||||| || || ||    
T  24362179 cgtgtcgtgtccggacaccgacacgacattgacacatataattacactgaattatgtgattctctcaaattattagcggtgtcggcgtgtcggtgtctgt 24362278  T
Q  358 gtcgttttcggtgtccgtgtccgtatc 384  Q
    ||||| | |||||||||| ||||||||    
T  24362279 gtcgtatccggtgtccgtatccgtatc 24362305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 15816089 - 15816205
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtc 340  Q
    ||||||| ||||| ||| |||||||||||||||||| | |||||| |||||| ||||||||||||  ||| ||||||||| |       |||||||||||    
T  15816089 gtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtc 15816188  T
Q  341 ggcgtgtccgtatccgt 357  Q
    |||||||| || |||||    
T  15816189 ggcgtgtcagtgtccgt 15816205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 261 - 385
Target Start/End: Complemental strand, 22652055 - 22651931
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtc 360  Q
    |||||||||||||||||| |||||| |||||| | |||||| | || ||| ||||||||| |       |||| |||||||||||||| || ||||||||    
T  22652055 tgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 22651956  T
Q  361 gttttcggtgtccgtgtccgtatcc 385  Q
    || | ||||||| ||||||||||||    
T  22651955 gtgtccggtgtcagtgtccgtatcc 22651931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 43737811 - 43737917
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggc--gtgtccgtatccgtgtcgttttcggtgtccgtgtc 378  Q
    ||||| |||||||||||||||||||| ||||||||||||||        |||| |||| ||||  ||||| || |||||||||| | |||||||||||||    
T  43737811 cgacaccgacacatataattacactgtattttgtgattttcaagaaaatttagctgtgccggcgtgtgtcggtgtccgtgtcgtgtccggtgtccgtgtc 43737910  T
Q  379 cgtatcc 385  Q
     ||||||    
T  43737911 tgtatcc 43737917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 24858014 - 24857957
Alignment:
Q  335 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    ||||||||||||||| | |||||||||| | |||||| ||||||||||||| ||||||    
T  24858014 tgtgtcggcgtgtccatgtccgtgtcgtgtccggtgttcgtgtccgtatccgttcttc 24857957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 34897144 - 34897103
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  34897144 cgacatcgacacatataattacactgaattatgtgattttct 34897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 11927066 - 11927125
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||  |||||| | |||||| |||||||||||||||||||| ||| |||||||||    
T  11927066 tgtcgtgtatgacaccaacacgacaccgacacatataattacactgaattatgtgatttt 11927125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 12570487 - 12570549
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||  ||| |||| ||||||    
T  12570487 cgtgtagtgtctgacaccgatac-acatcgacacatataattacacttaattatgtgtttttct 12570549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 43737760 - 43737819
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 278  Q
    ||||||| ||||| ||||||| || |||||||||||||  | ||||||||||||||||||    
T  43737760 acggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccga 43737819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 3951537 - 3951575
Alignment:
Q  282 gacatcgacacatataattacactgcattttgtgatttt 320  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  3951537 gacaccgacacatataagtacactgcattttgtgatttt 3951575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 4786338 - 4786379
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||||||||||||||||||| ||| |||||||||||    
T  4786338 cgacaccgacacatataattacactgaattatgtgattttct 4786379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 24196646 - 24196698
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgta 382  Q
    ||||||||||||||||||| || ||||| |||| ||||||||| || ||||||    
T  24196646 ttagttgtgtcggcgtgtcggtgtccgtatcgtattcggtgtctgtatccgta 24196698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 348
Target Start/End: Original strand, 29447048 - 29447177
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||  ||| ||| ||||||  ||||||||  | |||||||||||||||||| | |||| |||||| | || ||||| || ||| |||||||    
T  29447048 acggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacaccgacatgacaccgacacttgtagttacattgaattatgtgatt 29447147  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtc 348  Q
    ||||       |||||||||||| ||||||    
T  29447148 ttctcaaattattagttgtgtcgacgtgtc 29447177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 29447523 - 29447479
Alignment:
Q  261 tgtcgtgtccgacaccgatacgacatcgacacatataattacact 305  Q
    ||||||||| |||||||| |||||| | |||||||||||||||||    
T  29447523 tgtcgtgtctgacaccgacacgacaccaacacatataattacact 29447479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 385
Target Start/End: Complemental strand, 9957 - 9853
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccg 380  Q
    ||||| |||||||||||||||||||||||||| |||||||||       |||| |||||||||||||| || ||| |||||| | |||||||||||||||    
T  9957 cgacaccgacacatataattacactgcattttatgattttctaaaaaaattagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtgtccg 9858  T
Q  381 tatcc 385  Q
    |||||    
T  9857 tatcc 9853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 385
Target Start/End: Complemental strand, 24339741 - 24339597
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtc 340  Q
    ||||||| ||||| ||| |||||||||||||||||||| |||||| |||||| | ||||||||||| ||| ||||||||| |       |||| ||||||    
T  24339741 gtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 24339642  T
Q  341 ggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||||  | ||| |||||| | |||||||||| |||||||||    
T  24339641 ggcgtgtcaatgtccatgtcgtgtccggtgtccgtatccgtatcc 24339597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 25822776 - 25822689
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 306  Q
    ||||||| ||||||||| |||  ||||||  |||||||  |||||||||||||| |||||||||||| |||||| | |||||||||||    
T  25822776 acggacactccttagattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacactg 25822689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 4794980 - 4794923
Alignment:
Q  249 gtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 306  Q
    ||||||||| ||||||||||||||||||||||||  | |||||| |||||||||||||    
T  4794980 gtgtcagatacgtgtcgtgtccgacaccgatacggtaccgacacttataattacactg 4794923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 6630890 - 6630979
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 348  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||| |||  |||| |||||       ||||| |||||||||||||    
T  6630890 cgtgttgtgtccgacaccaacacgacatcgacacatataattacactgaattaagtgactttctcaaattattagtggtgtcggcgtgtc 6630979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 26329360 - 26329423
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||| |||||||| |||||  |||||||||||||||||||| ||| |||| ||||||    
T  26329360 cgtgtcgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtgtttttct 26329423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 32308200 - 32308138
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||||||| ||||||| ||||||  |||||||| |||||||||| ||| |||||||||||    
T  32308200 gtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaattatgtgattttct 32308138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 11665418 - 11665479
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    |||||||||| ||||||||| | ||||||||||| |||||||| |||| ||| |||||||||    
T  11665418 cgtgtcgtgttcgacaccgacatgacatcgacacttataattagactgaattatgtgatttt 11665479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 15902902 - 15902842
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||||| ||||| || ||| |||||||||||||||||||  ||| |||||||||    
T  15902902 gtgtcgtgtccgataccgacacaacaccgacacatataattacactaaattatgtgatttt 15902842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 27945101 - 27945000
Alignment:
Q  280 acgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtcc 379  Q
    |||||| |||||| | ||||||||||| ||| ||| |||||||       ||||| ||||||||||||| || |||||||||| | |||||||||| |||    
T  27945101 acgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatcc 27945002  T
Q  380 gt 381  Q
    ||    
T  27945001 gt 27945000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 385
Target Start/End: Original strand, 9408316 - 9408445
Alignment:
Q  263 tcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc-------cgtatcc 355  Q
    ||||||| ||||||||||||||| |||||| | ||||||||||  ||| ||||||||| |       ||| ||||||||| |||||        || |||    
T  9408316 tcgtgtctgacaccgatacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtcagtgtctggtgtcc 9408415  T
Q  356 gtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||| ||||||||||||||||||||||    
T  9408416 gtgtcgtattcggtgtccgtgtccgtatcc 9408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 22602709 - 22602751
Alignment:
Q  280 acgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||| |||||||||||||||||||| ||| |||||||||||    
T  22602709 acgacaccgacacatataattacactgaattatgtgattttct 22602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 23859985 - 23860035
Alignment:
Q  335 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    |||||||| ||||| |||||| |||||| |||| |||||||||||||||||    
T  23859985 tgtgtcggtgtgtcagtatccatgtcgtgttcgatgtccgtgtccgtatcc 23860035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 1433458 - 1433409
Alignment:
Q  336 gtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    |||||||||||||  | |||||||||| ||||||||||||| ||||||||    
T  1433458 gtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgcccgtatcc 1433409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 9482993 - 9482952
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||||||||||||||||||| ||| |||||||||||    
T  9482993 cgacaccgacacatataattacactgaattgtgtgattttct 9482952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 385
Target Start/End: Original strand, 21140988 - 21141086
Alignment:
Q  287 cgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    |||||| |||||| |||||| ||| | |||||||||       ||||| |||||| |||||| |  |||||||||| | ||||||||||||||||||||    
T  21140988 cgacacctataatcacactgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtgtccgtatcc 21141086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 21560572 - 21560523
Alignment:
Q  271 gacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||||||| |||||| | ||||||||||| ||| |||||||||    
T  21560572 gacaccgatacgacaccgacacttgtaattacactgaattatgtgatttt 21560523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 381
Target Start/End: Complemental strand, 13516 - 13359
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||| ||| ||||||||||  |||||||| ||||||||||||||||||     ||||| |||| | | ||||| ||||| ||| |||||||    
T  13516 acggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacac-----cgacaccgacccttgtaattgcactgaattatgtgatt 13422  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 381  Q
    ||||       ||||||||||||||||||| || |||||||| | | |||||||||| |||||    
T  13421 ttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgt 13359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 381
Target Start/End: Original strand, 21811 - 21968
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||| ||| ||||||||||  |||||||| ||||||||||||||||||     ||||| |||| | | ||||| ||||| ||| |||||||    
T  21811 acggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacac-----cgacaccgacccttgtaattgcactgaattatgtgatt 21905  T
Q  319 ttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 381  Q
    ||||       ||||||||||||||||||| || |||||||| | | |||||||||| |||||    
T  21906 ttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgt 21968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 16000065 - 16000120
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||||||||||||||| || || ||||||| ||||||||||||||||||||||    
T  16000065 ttagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatcc 16000120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 14028067 - 14028025
Alignment:
Q  280 acgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  14028067 acgacaccgacacatataattacactgcattttgtgattttct 14028025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 16192729 - 16192791
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||| ||| ||| |||||||    
T  16192729 gtgtcgtgtctgacaccgacacgacatcaacacatataattacactgaattatgttattttct 16192791  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 13845525 - 13845566
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  13845525 cgacaccgacacatataattacactgcattttgtgattttct 13845566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 14209194 - 14209105
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 348  Q
    |||||||||||||||||||| ||||||  ||||| | ||||||||||| ||| ||||||||| |       |||||||||||||||||||    
T  14209194 cgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgtgattttttaaaattattagttgtgtcggcgtgtc 14209105  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 10335335 - 10335390
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||||||||||||||| || |||||||||| | |||||||||||| |||||||    
T  10335335 ttagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatcc 10335390  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 348
Target Start/End: Complemental strand, 34910397 - 34910309
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 348  Q
    ||||| |||||||||||||||||||| |||| | | ||||||||||| ||| ||||||||| |       |||||||||||||||||||    
T  34910397 gtgtcatgtccgacaccgatacgacaccgactcttgtaattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtc 34910309  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 2941617 - 2941576
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  2941617 cgacaccgacacatataattacactgtattttgtgattttct 2941576  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 8039820 - 8039860
Alignment:
Q  266 tgtccgacaccgatacgacatcgacacatataattacactg 306  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattacactg 8039860  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 46299764 - 46299804
Alignment:
Q  411 tgtacgagtttgccgcgtgaaataactactcatactggccc 451  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  46299764 tgtacgagtttgccgcgtgaaataaccactcatacttgccc 46299804  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 4991022 - 4991069
Alignment:
Q  336 gtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtat 383  Q
    ||||||| ||||| || |||||||||| ||||||||||||||||||||    
T  4991022 gtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgtgtccgtat 4991069  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 13845474 - 13845533
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 278  Q
    ||||||| ||||| ||||||| ||||| ||||||||||  ||| ||||||||||||||||    
T  13845474 acggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccga 13845533  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 750596 - 750723
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtcc-gtatccgt 357  Q
    |||||||||||||| ||||| |||||| |||||| | ||||| ||  | ||| |||||| || |       |||||||||||| ||||||  || |||||    
T  750596 cgtgtcgtgtccgataccgacacgacaccgacacttgtaattgcagcgaattatgtgatattttcaaattattagttgtgtcgccgtgtcaagtgtccgt 750695  T
Q  358 gtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||| | ||||||||||||||||||||    
T  750696 gtcgtgtccggtgtccgtgtccgtatcc 750723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 7171507 - 7171457
Alignment:
Q  335 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 385  Q
    ||||||||| |||| ||||||||||||| | ||||||| ||||||||||||    
T  7171507 tgtgtcggcatgtcagtatccgtgtcgtgtccggtgtctgtgtccgtatcc 7171457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 35222997 - 35222930
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 348  Q
    ||||| ||||||||||||||||| || ||| |||||||||||       |||||||||||||||||||    
T  35222997 cgacaccgacacatataattacattgaattatgtgattttctaaaaatgttagttgtgtcggcgtgtc 35222930  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 4987229 - 4987330
Alignment:
Q  219 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatt 318  Q
    ||||||| ||||  ||| ||| ||||||| ||||| ||  |||||||||||| ||||||| ||| || | |||| | ||||||||||| ||| |||||||    
T  4987229 acggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaattatgtgatt 4987328  T
Q  319 tt 320  Q
    ||    
T  4987329 tt 4987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 25093561 - 25093520
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||| |||||||||||||||||||| ||| |||||||||||    
T  25093561 cgacaccgacacatataattacactgaattgtgtgattttct 25093520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 502
Target Start/End: Original strand, 46300108 - 46300136
Alignment:
Q  474 atcattaatgaatagttattgaattttaa 502  Q
    |||||||||||||||||||||||||||||    
T  46300108 atcattaatgaatagttattgaattttaa 46300136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 8808 - 8746
Alignment:
Q  330 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    |||| |||||||||||||| || |||||||||| | |||||||||||||||||||||| ||||    
T  8808 ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttc 8746  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 376
Target Start/End: Complemental strand, 241693 - 241558
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtc 340  Q
    ||||||| ||||| ||  |||||||||||||||||| | |||||| ||||||  |||||||||||  ||| |||||||||         |||| ||||||    
T  241693 gtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaattatgtgatttttccaaattattagctgtgtc 241594  T
Q  341 ggcgtgtccgtatccgtgtcgttttcggtgtccgtg 376  Q
    |||||||| || |||||||||| | |||||||||||    
T  241593 ggcgtgtcagtgtccgtgtcgtgtccggtgtccgtg 241558  T

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Target: scaffold0044 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 53279 - 53198
Alignment:
Q  241 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    ||||||| ||||| ||  |||||| ||||||||||||| ||| || |||||| ||||||||||||| ||| |||||||||||    
T  53279 gtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttct 53198  T

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Target: scaffold0279 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 17839 - 17903
Alignment:
Q  240 tgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacac 304  Q
    |||||||| ||||| ||  |||||||||||| |||||||||||||| || |||||||||||||||    
T  17839 tgtgtcccagtgtcggacacgtgtcgtgtccaacaccgatacgacaccgtcacatataattacac 17903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 44486 - 44566
Alignment:
Q  242 tgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||| ||||| ||  ||||| |||||| ||||||| |||| | |||||||||||||||||||| ||| |||||||||||    
T  44486 tgtcccagtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactgaattatgtgattttct 44566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 462 - 566
Alignment:
Q  281 cgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccg 380  Q
    ||||| |||||| | ||||||||||| ||||||||||||| |       ||||  |||||||||| || || |||||| ||| |||||||||||||||||    
T  462 cgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgtgtccg 561  T
Q  381 tatcc 385  Q
    |||||    
T  562 tatcc 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 9726 - 9788
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttct 322  Q
    |||||||||| |||||| | |||||| |||||||||||||||||||| |||  ||||||||||    
T  9726 gtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgattttct 9788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 23588 - 23531
Alignment:
Q  263 tcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    |||||||||||||||| ||||||  ||||| ||||||||||||| ||| |||||||||    
T  23588 tcgtgtccgacaccgaaacgacactgacacttataattacactgaattatgtgatttt 23531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 6393 - 6349
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattaca 303  Q
    ||||||||| || |||||||||||||| |||||||||||||||||    
T  6393 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 6349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 263350 - 263475
Alignment:
Q  259 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtg 358  Q
    ||||||||||| |||||||| ||||||  ||||| ||||||||||||| ||| |||| ||||||       ||||  |||| | | |||| || ||||||    
T  263350 cgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaattattagcagtgttgacatgtcagtgtccgtg 263449  T
Q  359 tcgttttcggtgtccgtgtccgtatc 384  Q
    |||| | | |||||||||||||||||    
T  263450 tcgtatccagtgtccgtgtccgtatc 263475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 130487 - 130430
Alignment:
Q  335 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 392  Q
    ||||||||| ||||  | |||||||||| | |||||||||||||||||||||| ||||    
T  130487 tgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttc 130430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 3828 - 3888
Alignment:
Q  260 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttgtgatttt 320  Q
    ||||||||||||||||| | ||||||  ||||| | ||||||||||| ||| |||||||||    
T  3828 gtgtcgtgtccgacaccaacacgacactgacacttgtaattacactgaattatgtgatttt 3888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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