View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18025_low_9 (Length: 513)
Name: NF18025_low_9
Description: NF18025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18025_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 97 - 501
Target Start/End: Complemental strand, 48809733 - 48809327
Alignment:
| Q |
97 |
taatcaagtcgcatacgacctaacattttaacgagttaaannnnnnnccccattttctattctctatgtttcctccatttccgtagttttaaaaatacaa |
196 |
Q |
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| T |
48809733 |
taatcaagtcgcatacgacctaacattttaacgagttaaatttttttccccattttctgttctctatgtttcctccatttccgtagttttaaaaatacaa |
48809634 |
T |
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| Q |
197 |
---ataaaaaa-tctgatttttgttaagtgaatcctcgcctggcttagctcctcccactacaagaatgtatggaatttgtgtggaacagtttcacatgca |
292 |
Q |
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| T |
48809633 |
caaataaaaaaatctgttttttgttaagtgaatcctcgcctggcttagctcctcccactacaagaatgtatggaatttgtgtggaacagtttcacatgca |
48809534 |
T |
|
| Q |
293 |
aagcgcgaaaaagcccacgcaaagtgcactttggtgcggaattaatgttcacgtaaaaaatgccattgcaaatggttacggcggaatttggccgctgcaa |
392 |
Q |
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| T |
48809533 |
aagcgcaaaaaagcccacgcaaagtgcactt-ggtgcggaattaatgttcacgtaaaaaacgccattgcaaatggttacggcggaatttggccgctgcaa |
48809435 |
T |
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| Q |
393 |
aacccatagtttcttttgtctctatgtcttctcttccattttatttattgatggggtagttttgagtcaannnnnnnatattttatttgagacaactctt |
492 |
Q |
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| T |
48809434 |
aacccatagttttttttgtctctatgtcctctcttccattttatttattgatgaggtggttttgagtcaattttttt-ttttttatttgagacaactctt |
48809336 |
T |
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| Q |
493 |
cttcatctc |
501 |
Q |
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| T |
48809335 |
cttcatctc |
48809327 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 38549271 - 38549222
Alignment:
| Q |
411 |
tctctatgtcttctcttccattttatttattgatggggtagttttgagtc |
460 |
Q |
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| T |
38549271 |
tctctatgttttctcttccatttactttattgatggagtggttttgagtc |
38549222 |
T |
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