View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18026_high_3 (Length: 433)
Name: NF18026_high_3
Description: NF18026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18026_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 326
Target Start/End: Original strand, 30904998 - 30905311
Alignment:
| Q |
9 |
gaagagtatatatgttgaaattatatagttggaatggaagtccactctcctatattgttttgtttaagctaattagtttaatcatggtaagtaatagaat |
108 |
Q |
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| T |
30904998 |
gaagaatatatatgttgaaattatataattggaatggaattccactctcctat--tgttttgtttaagctaattagtttaatcatggtaagtaatagaat |
30905095 |
T |
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| Q |
109 |
tattcatgtgtaattcttatagaagatcactgaaaatattggttttcttacgtggctatgtatcattttggttttttcatggtcatagaaattacgcagc |
208 |
Q |
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| T |
30905096 |
tattcatgtgtaattcttatagaagatcactgaaaatattggttttcttacgcggctatgtatcattttggtttcttcatggtcatagaaattacgcagc |
30905195 |
T |
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| Q |
209 |
accgacgctttagattttgatggtgttttcgatgtctgatacatgtcagtgtctgtcgcctacgctacacttacattcaatatatgatagtactattttc |
308 |
Q |
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| T |
30905196 |
accgacgctttaga--ttaatggtgttttcgatgtctgatatatgtcagtgtctgtcgcctatgctacacttacattcaatatatggtagtactattttc |
30905293 |
T |
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| Q |
309 |
ttaaattaatacttgtgt |
326 |
Q |
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| T |
30905294 |
ttaaattaatacttgtgt |
30905311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 30905311 - 30905351
Alignment:
| Q |
378 |
tggcaaaggttttaaatgtttatctaattaacgaaatatat |
418 |
Q |
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| T |
30905311 |
tggcaaaggttttaaatgtttatctaattaacgaaatatat |
30905351 |
T |
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