View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18026_high_6 (Length: 340)
Name: NF18026_high_6
Description: NF18026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18026_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 14231630 - 14231307
Alignment:
| Q |
20 |
tgagtgatgatggttcaagaaaagagtatgatcgtggtgtttgggttaatgaagatgatgatttgaatttttacaataagaatcatagttataggagaaa |
119 |
Q |
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| T |
14231630 |
tgagtgatgatggttcaagaaaagagtatgatcgtggtgtttgggttaatgaagatgatgatttgaacttttataataagaatcatagttataagagaaa |
14231531 |
T |
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| Q |
120 |
tgaatgtgatcgtgatgatttgaact------------------ttgggaggaaggatgatacttgcgaagatgaatttgatccagatgatgatatattt |
201 |
Q |
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| T |
14231530 |
tgaatgtgatcatgatgatttgaattatgatcagaagcatagttttgggaggagggatgatacttgcgaagatgaatttgatccagatgatgatatattt |
14231431 |
T |
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| Q |
202 |
aactttgaattatgacattaactgtggcatcactgtactttgcaaattctttgatgtgcaatttgcaggaacatactcattggcatagtagaagcaattt |
301 |
Q |
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| T |
14231430 |
aactttgaattatgacattaactgtggcatcactgtactttgaaaattctttgatgtgcaatttgcaagaacatactcattggcataatagaagcaattt |
14231331 |
T |
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| Q |
302 |
ttattattattctgtttttgctat |
325 |
Q |
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| T |
14231330 |
ttattattattctgtttttgctat |
14231307 |
T |
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