View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18026_low_10 (Length: 209)
Name: NF18026_low_10
Description: NF18026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18026_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 21352604 - 21352698
Alignment:
| Q |
47 |
aaaaggagagtccagtgccaaaacaagcatcttggtcttggcctagcacctctaatactttgccgcatccaaagcaaaaaccaattacgccaagt |
141 |
Q |
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| T |
21352604 |
aaaaggagagtccaatgccaaaacaagcatcttggtcttggcctagcacctctaatactttgctgcgtccaaagcaaaaaccaattacgccaagt |
21352698 |
T |
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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 21352719 - 21352774
Alignment:
| Q |
139 |
agtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgcaatct |
194 |
Q |
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| T |
21352719 |
agtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgcaatct |
21352774 |
T |
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Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 26124 - 26218
Alignment:
| Q |
47 |
aaaaggagagtccagtgccaaaacaagcatcttggtcttggcctagcacctctaatactttgccgcatccaaagcaaaaaccaattacgccaagt |
141 |
Q |
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| T |
26124 |
aaaaggagattccagtgccgaagcaagcatcttggtcttgggctaggacctctaacactttgcctcctccaaagcaaaaaccaattatgccaagt |
26218 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 26048 - 26095
Alignment:
| Q |
1 |
gggtcattgtcccctaaaataaacaagacgggaacttttacatcagaa |
48 |
Q |
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| T |
26048 |
gggtcattgtcccctaaaataaacaagacgggaacttttacatcagaa |
26095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 26236 - 26290
Alignment:
| Q |
139 |
agtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgcaatc |
193 |
Q |
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||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
26236 |
agtcatgaattcatctgccagccactctgtccacgcggtaatgtcttttgcaatc |
26290 |
T |
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