View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18026_low_2 (Length: 465)
Name: NF18026_low_2
Description: NF18026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18026_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 33223636 - 33223195
Alignment:
| Q |
9 |
gataatactctttaaatgcaatatcaaacccttctttctccaacactttgtctttccaattctgaaactcaaccaaagtttgataagccggctcgccgtg |
108 |
Q |
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| T |
33223636 |
gataatactctttaaatgcaatatcaaacccttctttctccaacactttgtctttccaattctgaaactcaaccaaagtttgataagccggctcgccgtg |
33223537 |
T |
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| Q |
109 |
accaagaagtttaatgctatatcctttgcttagaataatccatccttgtggatcacgtctgaggcaaaacaagtctttcactattttttgaatctcgcaa |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
33223536 |
accaagaagtttaatgctatgtcctttgcttagaataatccatccttgtggatcacgtctgaggcaaaacaagtctttcactatttcttgaatcttgcaa |
33223437 |
T |
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| Q |
209 |
tccacagtctcttgatgcttcttgttttgtttctttctttctatacccatccagaaacttggaacacggttaggatcatctttgcccacttgataattct |
308 |
Q |
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| T |
33223436 |
tccacagtctcttgatgcttcttgttttgtttctttctttctatacccatccagaaacttggaacacggttaggatcatctttgcccacttgataattct |
33223337 |
T |
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| Q |
309 |
ctattataacgtctgcacgcttgatagtctcgtgcctcttgatcttttccaactcaagtgtgaaatcttggatccattttttgttggtacctccatagat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223336 |
ctattataacgtctgcacgcttgatagtctcgtgcctcttgatcttttccaactcaagtgtgaaatcttggatccattttttgttggtacctccatagat |
33223237 |
T |
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| Q |
409 |
aaagatgtatctgtccactttcacctgaatcacatgataaaa |
450 |
Q |
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| T |
33223236 |
aaagatgtatctgtccactttcacctgaatcacatgataaaa |
33223195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 33238729 - 33238662
Alignment:
| Q |
367 |
tgtgaaatcttggatccattttttgttggtacctccatagataaagatgtatctgtccactttcacct |
434 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||| || ||||||||||| ||||||||| |
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| T |
33238729 |
tgtgaagtcttggatccattttttgtcactgcctccatagatgaatatgtatctgtctcctttcacct |
33238662 |
T |
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