View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18026_low_5 (Length: 419)

Name: NF18026_low_5
Description: NF18026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18026_low_5
NF18026_low_5
[»] chr5 (19 HSPs)
chr5 (10-400)||(33821520-33821910)
chr5 (11-215)||(33734191-33734395)
chr5 (118-201)||(33762760-33762843)
chr5 (127-215)||(33748779-33748867)
chr5 (127-215)||(33834899-33834987)
chr5 (291-400)||(33734534-33734643)
chr5 (118-202)||(33904390-33904474)
chr5 (119-204)||(33679811-33679896)
chr5 (289-400)||(33749004-33749115)
chr5 (118-204)||(33865881-33865967)
chr5 (125-204)||(33698534-33698613)
chr5 (289-400)||(33904591-33904702)
chr5 (290-400)||(33763363-33763473)
chr5 (13-63)||(33748665-33748715)
chr5 (296-371)||(33846606-33846681)
chr5 (294-400)||(33698697-33698803)
chr5 (13-63)||(33834785-33834835)
chr5 (298-400)||(33867039-33867141)
chr5 (13-74)||(33762658-33762719)
[»] scaffold0023 (1 HSPs)
scaffold0023 (106-210)||(114199-114303)
[»] scaffold0247 (2 HSPs)
scaffold0247 (115-214)||(22142-22241)
scaffold0247 (28-72)||(22284-22328)
[»] scaffold0193 (2 HSPs)
scaffold0193 (127-214)||(25206-25293)
scaffold0193 (289-395)||(24327-24433)
[»] chr8 (3 HSPs)
chr8 (127-205)||(21305875-21305953)
chr8 (13-79)||(21305761-21305827)
chr8 (297-400)||(21306041-21306144)
[»] chr7 (3 HSPs)
chr7 (116-202)||(5471194-5471280)
chr7 (291-400)||(5470162-5470271)
chr7 (10-73)||(5471317-5471380)
[»] scaffold0001 (2 HSPs)
scaffold0001 (116-202)||(148773-148859)
scaffold0001 (297-400)||(149000-149103)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 33821520 - 33821910
Alignment:
Q  10 agatgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggtctctcnnnnnnnnnnnnnnctactgattct 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||              |||||||||||    
T  33821520 agatgaatgagttgaaagagttataggtcgaggtataataacttcatgagctttcattgtttccttaggtctctctttttcatttttttctactgattct 33821619  T
Q  110 gaaagaaccttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33821620 gaaagaaccttcttccgcaaatgtgtgttccaatagtttttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatctatattata 33821719  T
Q  210 tgtataaatacattagctaaaatgttatctaaaaaatacatcatacttaattctagctaggctacatgcattgccctaattggaagcttacctattccct 309  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  33821720 tgtataaatacattagctaaaatgttatctaaagaatacatcatacttaattctagctaggctacatgcatttccctaattggaagcttacctattcccc 33821819  T
Q  310 aggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataatttacccacctca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33821820 aggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataatttacccacctca 33821910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 33734191 - 33734395
Alignment:
Q  11 gatgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggtctctcnnnnnnnnnnnnnnctactgattctg 110  Q
    |||||||||||||||| | ||  |||| | |||||||||||||||||||||||||||||||||| |||| ||||              ||  || |||||    
T  33734191 gatgaatgagttgaaaaaattcgaggttggggtttaataacttcatgagctttcattgtttccttaggtttctctttttctttcttttcttttgtttctg 33734290  T
Q  111 aaagaaccttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatat 210  Q
    ||| ||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  33734291 aaacaaccttcttccgcaaatgtgtgtgccaaaagtttttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatctatattatat 33734390  T
Q  211 gtata 215  Q
    |||||    
T  33734391 gtata 33734395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 33762760 - 33762843
Alignment:
Q  118 cttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatct 201  Q
    |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||    
T  33762760 cttcttccgcaaatttgtgtgccaatagtttttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 33748779 - 33748867
Alignment:
Q  127 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtata 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||   |||| |||||||||||||| | ||||||||||||||||||||    
T  33748779 caaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctatattatatgtata 33748867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 33834899 - 33834987
Alignment:
Q  127 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtata 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||   |||| |||||||||||||| | ||||||||||||||||||||    
T  33834899 caaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctatattatatgtata 33834987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 33734534 - 33734643
Alignment:
Q  291 ggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataattt 390  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||| || | || |||||| || ||||| ||||||  ||||||||||    
T  33734534 ggaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataattt 33734633  T
Q  391 acccacctca 400  Q
    ||||||||||    
T  33734634 acccacctca 33734643  T

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Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 33904390 - 33904474
Alignment:
Q  118 cttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatcta 202  Q
    |||||| | ||||||||||| |||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  33904390 cttctttctcaaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 33904474  T

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Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 33679811 - 33679896
Alignment:
Q  119 ttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctata 204  Q
    ||||| ||||||| ||||| |||||| || ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  33679811 ttcttgcgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctata 33679896  T

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Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 33749004 - 33749115
Alignment:
Q  289 ttggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataat 388  Q
    |||||||||||||||||||| | ||| ||||||||||| | |||||||||||||||||| || | || | |||||||||||||  | |||||||||||||    
T  33749004 ttggaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataat 33749103  T
Q  389 ttacccacctca 400  Q
    ||| ||| ||||    
T  33749104 ttaaccatctca 33749115  T

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Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 33865881 - 33865967
Alignment:
Q  118 cttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctata 204  Q
    |||||| || |||||||||| |||||| || ||||||||||||||||||||||  || || ||||||||||||||||||||||||||    
T  33865881 cttcttgcgtaaatgtgtgtgccaataattcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatctata 33865967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 33698534 - 33698613
Alignment:
Q  125 cgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctata 204  Q
    ||||||| ||||| |||||| || ||||||||||||||||| ||||  |||||||||||||||||||| |||||||||||    
T  33698534 cgcaaatttgtgtgccaataattcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctata 33698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 33904591 - 33904702
Alignment:
Q  289 ttggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataat 388  Q
    ||||||| ||||||||||||||| || |||||||||||||  ||||||||| ||||||| || | || |||||| || ||||| || ||| |||||||||    
T  33904591 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttgggggttaaataat 33904690  T
Q  389 ttacccacctca 400  Q
    ||| ||||||||    
T  33904691 ttaaccacctca 33904702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 400
Target Start/End: Original strand, 33763363 - 33763473
Alignment:
Q  290 tggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataatt 389  Q
    |||||||||||||||| ||||| || || |||||||||| ||||| |||| ||||||| || | || |||||| || ||||| || ||| ||||||||||    
T  33763363 tggaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 33763462  T
Q  390 tacccacctca 400  Q
    || ||||||||    
T  33763463 taaccacctca 33763473  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 33748665 - 33748715
Alignment:
Q  13 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagcttt 63  Q
    |||||||||||||| |||||  || ||||||||||||||||||||||||||    
T  33748665 tgaatgagttgaaaaagttaatggacgaggtttaataacttcatgagcttt 33748715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 33846606 - 33846681
Alignment:
Q  296 cttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgat 371  Q
    |||||||||| || | ||| ||||||||||| | |||||||||||||||||| || | || | |||||||||||||    
T  33846606 cttacctatttcccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgat 33846681  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 400
Target Start/End: Original strand, 33698697 - 33698803
Alignment:
Q  294 agcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataatttacc 393  Q
    ||||||| | |||||||| || |||||||||||||  |||||||||  |||||| ||||  |  ||||||||||||||    |||||||||||||| | |    
T  33698697 agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaac 33698796  T
Q  394 cacctca 400  Q
    |||||||    
T  33698797 cacctca 33698803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 33834785 - 33834835
Alignment:
Q  13 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagcttt 63  Q
    |||||||||||||| |||||  || |||||||| |||||||||||||||||    
T  33834785 tgaatgagttgaaaaagttaatggacgaggtttgataacttcatgagcttt 33834835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 33867039 - 33867141
Alignment:
Q  298 tacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataatttacccacc 397  Q
    ||||| |||||||  || |||||||||||||  ||||||||| ||||||| || | ||  || ||||| |||||  | |||||||||||||||| |||||    
T  33867039 tacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaaccacc 33867138  T
Q  398 tca 400  Q
    |||    
T  33867139 tca 33867141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 33762658 - 33762719
Alignment:
Q  13 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcct 74  Q
    |||||||||||||| | ||  |||| ||||||||||||||||||| | |||||| |||||||    
T  33762658 tgaatgagttgaaaaaattcgaggttgaggtttaataacttcatgtgttttcatagtttcct 33762719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 114303 - 114199
Alignment:
Q  106 ttctgaaagaaccttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatat 205  Q
    |||| ||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||   ||||||||| | |||||||||||||||||||||    
T  114303 ttctaaaacaaccttcttcctcaaatgtgtgtgccaatagtttttgacatcattagctgttctagccggaagccttcccgcaatcaatgaccatctatat 114204  T
Q  206 tatat 210  Q
    |||||    
T  114203 tatat 114199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 22241 - 22142
Alignment:
Q  115 aaccttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtat 214  Q
    ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| ||  ||||||||    
T  22241 aaccttctttcgtaaatgtgtattccaatagtttttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatctgtacgatatgtat 22142  T

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Target: scaffold0247; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 22328 - 22284
Alignment:
Q  28 agttataggtcgaggtttaataacttcatgagctttcattgtttc 72  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  22328 agttataggccgaggtttaataacctcatgagctttcattgtttc 22284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 25293 - 25206
Alignment:
Q  127 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatattatatgtat 214  Q
    |||||| ||||||||||||||||||||||||||||||| |||||   |||| |||||||||||||||| |||||||||||||||||||    
T  25293 caaatgggtgttccaatagtttttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatctatattatatgtat 25206  T

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Target: scaffold0193; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 395
Target Start/End: Complemental strand, 24433 - 24327
Alignment:
Q  289 ttggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataat 388  Q
    ||||| |||||||||||||||||||| |||||||||||||  || | |||||||||||| |  | || |   || |||||||| | ||||||||||||||    
T  24433 ttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatccttagaaaagtcctccctgttgatgtaagggtttaaataat 24334  T
Q  389 ttaccca 395  Q
    |||||||    
T  24333 ttaccca 24327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 21305875 - 21305953
Alignment:
Q  127 caaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatctatat 205  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  21305875 caaatttgtgtgccaatagttcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatctatat 21305953  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 21305761 - 21305827
Alignment:
Q  13 tgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcctcaggt 79  Q
    ||||||| |||| | ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  21305761 tgaatgacttgacaaagttataggacgaggtttaataacttcatgagctttcatggtttccttaggt 21305827  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 400
Target Start/End: Original strand, 21306041 - 21306144
Alignment:
Q  297 ttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataatttacccac 396  Q
    ||||||||| ||||| || ||||||||||||| ||||| |||  ||||||| || | ||  ||| |||||||||| || ||| |||| ||||||| ||||    
T  21306041 ttacctatttcctagtagtttgtgtaaccttaggatcaaatcttcttcatcctcagaaaatcttcctctgttgatgttggggcttaagtaatttaaccac 21306140  T
Q  397 ctca 400  Q
    ||||    
T  21306141 ctca 21306144  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 5471280 - 5471194
Alignment:
Q  116 accttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatcta 202  Q
    |||||||||  ||| ||||||||||||||||||||||||  ||||||||||||||  ||||||||| ||||||||||||||||||||    
T  5471280 accttcttcaacaagtgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 5471194  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 5470271 - 5470162
Alignment:
Q  291 ggaagcttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataattt 390  Q
    ||||||||||||||| |||| ||| ||||||||||||| |||||||||| ||||||| || | || ||||| ||| ||||| || || ||||||||||||    
T  5470271 ggaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgatgttgggctttaaataattt 5470172  T
Q  391 acccacctca 400  Q
    | ||||||||    
T  5470171 atccacctca 5470162  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 5471380 - 5471317
Alignment:
Q  10 agatgaatgagttgaaagagttataggtcgaggtttaataacttcatgagctttcattgtttcc 73  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||  |||||||||||||| |||    
T  5471380 agatgattgagttgaaaaagttataggtctaggtttaataacttggtgagctttcattgtctcc 5471317  T

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Target: scaffold0001 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 148773 - 148859
Alignment:
Q  116 accttcttccgcaaatgtgtgttccaatagtttttcacatcattagctgttctactaggaagccttgcagcaatcaatgaccatcta 202  Q
    ||||||||  |||| ||||||| ||||||||| || ||||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  148773 accttcttgtgcaagtgtgtgtgccaatagttctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatcta 148859  T

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Target: scaffold0001; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 400
Target Start/End: Original strand, 149000 - 149103
Alignment:
Q  297 ttacctattccctaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttgatattagggtttaaataatttacccac 396  Q
    ||||||||||||||| || ||||||||||||| |||||||||  ||||||| || | || |||||| || ||||| || ||| |||||||||||| ||||    
T  149000 ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 149099  T
Q  397 ctca 400  Q
    ||||    
T  149100 ctca 149103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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