View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18026_low_9 (Length: 216)
Name: NF18026_low_9
Description: NF18026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18026_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 45345887 - 45345776
Alignment:
| Q |
15 |
ataggtaaggtatgactgttagagttttgtggaattggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataaga |
114 |
Q |
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| T |
45345887 |
ataggtaaggtatgactgttagagttttgtggaat------gaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataaga |
45345794 |
T |
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| Q |
115 |
aggaaaagttcaactcac |
132 |
Q |
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| T |
45345793 |
aggaaaagttcaactcac |
45345776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 45341505 - 45341419
Alignment:
| Q |
50 |
tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataagaaggaaaagttcaactcacgtat |
136 |
Q |
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| T |
45341505 |
tggaatgaaaaaactaagtttattgaataacatagaggtggcatatatagccttacatgagaagaaggaaaagttcaactcacgtat |
45341419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 45345626 - 45345556
Alignment:
| Q |
129 |
tcacgtatgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacat |
199 |
Q |
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| T |
45345626 |
tcacatatgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacat |
45345556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 28302576 - 28302634
Alignment:
| Q |
50 |
tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatga |
109 |
Q |
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| T |
28302576 |
tggaatgaaa-aactaactttattgaataacatagaggtggcatatatagccttacatga |
28302634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 33361652 - 33361705
Alignment:
| Q |
135 |
atgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaattt |
188 |
Q |
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| T |
33361652 |
atgcattcaatttaaatttggcacctcacaaactccaagttgatctcttgattt |
33361705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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