View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18027_high_1 (Length: 656)
Name: NF18027_high_1
Description: NF18027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18027_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 14 - 609
Target Start/End: Complemental strand, 29053213 - 29052618
Alignment:
| Q |
14 |
agagaagaaagcaaccctgcaaaaagcaaagtatccttcccctgaaaaacattagcaacaagaattcccttctgcattgtacttgtcacatgagttccca |
113 |
Q |
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| T |
29053213 |
agagaagaaagcaaccctgcaaaaagcaaagtatccttcccctgaaaaacattagcaacaagaattcccttctgcattgtactagtcacatgagttccca |
29053114 |
T |
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| Q |
114 |
tcaacaatgccccagaaaactccaacactgcagctgttaacacagcttgcctaagtgacaatgcaccagatccaacagaagttcccattgcatttgcaac |
213 |
Q |
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| T |
29053113 |
tcaacaatgcccctgaaaactccaacactgcagctgtcaacacagcttgcctaagtgacaatgcaccagatccaactgaagttcccattgcatttgcaac |
29053014 |
T |
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| Q |
214 |
atcattagcaccaatgttccaagccatgtaaaatccaaacaaaagtgttccatatgataacatctttgtcttcaatgccaaaccttgtcctaaagatgtc |
313 |
Q |
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| T |
29053013 |
atcattagcaccaatgttccaagccatgtaaaatccaaacaaaagtgttccatatgataacatctttgtcttcaatgccaaaccttgtcctaaagatgtc |
29052914 |
T |
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| Q |
314 |
ataaacaaaggaaaaacaagtgcagccattactatacatattgttatagcagaagctgttcttgatgatatgtgaaatgctttagccattcctgatactt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052913 |
ataaacaaaggaaaaacaagtgcagccattactatacatattgttatagcagaagctgttcttgatgatatgtgaaatgctttagccattcctgatactt |
29052814 |
T |
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| Q |
414 |
catcattattctctccgttttctgttgcagcatgttggtgatgttcattgagctgaatttcttcttttgaaccctcttctccttctgcttctgcaaaaga |
513 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052813 |
catcattattctccccgttttctgttgcagcatgttggtgatgttcattgagctgaatttcttcttttgaaccctcttctccttctgcttctgcaaaaga |
29052714 |
T |
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| Q |
514 |
tgataagctagcaaaagggtgtgtgagtttacagtttttcaaattttttgctatgtttggtgaaagtggaagtggcttcacatggagaaactctct |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052713 |
tgataagctagcaaaagggtgtgtgagtttacagtttttcaaattttttgctatgtttggtgaaagtggaagtggcttcacatggagaaactctct |
29052618 |
T |
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