View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18027_high_3 (Length: 528)
Name: NF18027_high_3
Description: NF18027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18027_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2474559 - 2474778
Alignment:
| Q |
1 |
aaacgtcggtattcttattaatataaattgtttttgtnnnnnnnnnnnntaaatacactcagcagtgttgttcagtgcaacagctgaacgcccttagtta |
100 |
Q |
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| T |
2474559 |
aaacgtcggtattcttattaatataaattgtttttgtaaatagaaaaaataaatatactcagcagtgttgttcggtgcaacagctgaacgcccttagtta |
2474658 |
T |
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| Q |
101 |
tacgactgagaattttaatatttaacttccctacaaactctgctctgaatggcaaggaaggagaattttgctatgaaggtag-tttgatgtagattataa |
199 |
Q |
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| T |
2474659 |
tacgactgagaattttaatatttaacttccctacaaactctgctctgaatggcaaggaaggagaattttgctatgaaggtagttttgatgtagattataa |
2474758 |
T |
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| Q |
200 |
acgacttttctgcatatggt |
219 |
Q |
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|||||||||||||||||||| |
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| T |
2474759 |
acgacttttctgcatatggt |
2474778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 250 - 399
Target Start/End: Original strand, 2474795 - 2474941
Alignment:
| Q |
250 |
ttaccttgaaataaggaggaaaaagttattggttgatcttatcgttggttcttactataaaatcatcatgagtttaaaagaaaaaatgaattgcttcgaa |
349 |
Q |
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| T |
2474795 |
ttaccttgaaataaggaggaaaaagttattggttgatcttatcgttggttcttactataaaatca---tgagtttaaaagaaaaaatgaattgcttcgaa |
2474891 |
T |
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| Q |
350 |
aaagagcaacataaaaggatggaccgtcctccaagttaacatgagaagaa |
399 |
Q |
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| T |
2474892 |
aaagagcaacataaaacgatggaccgtcctccaagttaacatgagaagaa |
2474941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 374 - 512
Target Start/End: Original strand, 2474994 - 2475131
Alignment:
| Q |
374 |
cgtcctccaagttaacatgagaagaattcattaagacaaccgatctaatgaatctaaaacaacaaataggtaaatctgttgttgacttcattgaaagttt |
473 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
2474994 |
cgtcctcaaagttaacatgagaagaattcattaagacaaccgatctaatgaatctaaaacaacaaataggtaaatcggttgttgacttcattg-aagttt |
2475092 |
T |
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| Q |
474 |
agaaaaaacagcggggaaatgctcgatccaatttgctaa |
512 |
Q |
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| T |
2475093 |
agaaaaaacagcggggaaatgctcgatccaatttgctaa |
2475131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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