View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18027_high_4 (Length: 345)

Name: NF18027_high_4
Description: NF18027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18027_high_4
NF18027_high_4
[»] chr8 (10 HSPs)
chr8 (69-331)||(18785988-18786250)
chr8 (8-201)||(18771367-18771560)
chr8 (9-194)||(11437841-11438026)
chr8 (117-194)||(30544171-30544248)
chr8 (17-150)||(30850549-30850681)
chr8 (19-160)||(27085069-27085207)
chr8 (9-147)||(16051786-16051924)
chr8 (10-80)||(12774352-12774422)
chr8 (8-54)||(13304981-13305027)
chr8 (17-84)||(23893651-23893716)
[»] chr4 (11 HSPs)
chr4 (8-201)||(19602211-19602404)
chr4 (8-194)||(29437864-29438050)
chr4 (45-185)||(23354039-23354178)
chr4 (8-185)||(33519483-33519659)
chr4 (9-105)||(10576990-10577085)
chr4 (115-185)||(26160265-26160335)
chr4 (117-185)||(31859477-31859546)
chr4 (63-111)||(17184173-17184221)
chr4 (17-160)||(4733180-4733322)
chr4 (116-161)||(12028483-12028528)
chr4 (9-97)||(18444745-18444832)
[»] chr1 (15 HSPs)
chr1 (8-194)||(21549091-21549277)
chr1 (8-194)||(52270708-52270901)
chr1 (11-173)||(25778199-25778361)
chr1 (9-185)||(15298359-15298534)
chr1 (17-179)||(25730934-25731096)
chr1 (115-194)||(26853914-26853993)
chr1 (9-185)||(34533082-34533257)
chr1 (40-194)||(25665306-25665460)
chr1 (9-194)||(23506218-23506403)
chr1 (117-185)||(27460472-27460540)
chr1 (9-149)||(11984708-11984846)
chr1 (9-84)||(50047639-50047714)
chr1 (20-138)||(31314044-31314161)
chr1 (9-97)||(23223918-23224003)
chr1 (9-84)||(30675980-30676053)
[»] chr7 (11 HSPs)
chr7 (9-185)||(5636657-5636833)
chr7 (8-194)||(24596482-24596668)
chr7 (86-194)||(4829270-4829378)
chr7 (64-203)||(30406007-30406145)
chr7 (8-194)||(9552587-9552774)
chr7 (17-175)||(4091983-4092140)
chr7 (56-185)||(22334819-22334948)
chr7 (8-126)||(5312265-5312383)
chr7 (7-201)||(9800976-9801171)
chr7 (8-201)||(9760534-9760728)
chr7 (9-150)||(18466995-18467135)
[»] chr3 (13 HSPs)
chr3 (9-194)||(26298220-26298405)
chr3 (8-201)||(18474636-18474831)
chr3 (12-185)||(19218684-19218856)
chr3 (9-185)||(10342207-10342383)
chr3 (64-202)||(19285532-19285668)
chr3 (8-176)||(21828686-21828855)
chr3 (92-170)||(33578223-33578301)
chr3 (26-194)||(19542596-19542765)
chr3 (11-181)||(11475312-11475481)
chr3 (125-185)||(16970898-16970958)
chr3 (12-52)||(18066253-18066293)
chr3 (122-173)||(22489678-22489729)
chr3 (9-131)||(2729079-2729200)
[»] scaffold0386 (2 HSPs)
scaffold0386 (17-185)||(8226-8393)
scaffold0386 (17-185)||(11256-11423)
[»] chr5 (17 HSPs)
chr5 (24-194)||(18281714-18281884)
chr5 (8-185)||(18178591-18178766)
chr5 (116-192)||(23157379-23157455)
chr5 (9-150)||(12265092-12265229)
chr5 (116-201)||(25368073-25368159)
chr5 (17-184)||(16622134-16622300)
chr5 (7-185)||(7742371-7742548)
chr5 (9-185)||(31340839-31341012)
chr5 (9-173)||(20695093-20695256)
chr5 (25-148)||(19763395-19763517)
chr5 (10-181)||(20083952-20084122)
chr5 (9-77)||(17381492-17381560)
chr5 (9-77)||(22930523-22930591)
chr5 (9-185)||(25594141-25594316)
chr5 (117-150)||(22230235-22230268)
chr5 (117-186)||(23125496-23125565)
chr5 (85-185)||(24131080-24131180)
[»] chr2 (19 HSPs)
chr2 (11-194)||(25460368-25460545)
chr2 (9-160)||(17884052-17884202)
chr2 (51-172)||(27917552-27917672)
chr2 (8-194)||(14921575-14921750)
chr2 (10-185)||(18819131-18819305)
chr2 (9-185)||(21504066-21504241)
chr2 (86-176)||(31262420-31262510)
chr2 (8-52)||(31274417-31274461)
chr2 (86-185)||(15454065-15454163)
chr2 (139-194)||(24188455-24188510)
chr2 (17-110)||(18235807-18235900)
chr2 (66-185)||(21844367-21844485)
chr2 (115-185)||(24047785-24047855)
chr2 (123-185)||(25474459-25474521)
chr2 (8-49)||(25474591-25474632)
chr2 (9-54)||(30999351-30999396)
chr2 (117-185)||(18235919-18235987)
chr2 (9-185)||(21842683-21842858)
chr2 (115-175)||(39732119-39732179)
[»] scaffold0186 (1 HSPs)
scaffold0186 (8-73)||(33231-33296)
[»] chr6 (7 HSPs)
chr6 (9-181)||(22262835-22263006)
chr6 (8-159)||(16528129-16528279)
chr6 (9-90)||(15375982-15376063)
chr6 (88-185)||(32930036-32930133)
chr6 (123-182)||(12971952-12972011)
chr6 (17-54)||(15369294-15369331)
chr6 (121-185)||(17198405-17198469)
[»] scaffold0065 (1 HSPs)
scaffold0065 (8-194)||(12714-12907)
[»] scaffold0324 (1 HSPs)
scaffold0324 (220-323)||(8945-9048)
[»] scaffold0337 (1 HSPs)
scaffold0337 (8-194)||(3582-3774)
[»] scaffold0190 (1 HSPs)
scaffold0190 (14-180)||(11159-11324)
[»] scaffold0011 (1 HSPs)
scaffold0011 (17-70)||(227694-227747)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 69 - 331
Target Start/End: Complemental strand, 18786250 - 18785988
Alignment:
Q  69 ctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgatt 168  Q
    |||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18786250 ctctgccttgaagctcctgatgcttgaccatttccttgtaccgatggctttctaaatgaataaaaaagtgtgcaaaggtctcaattaatagtgtatgatt 18786151  T
Q  169 acttagggattaagagagtgaaaatacgggtttcccccaatctcaaaggaagatcctccagatgtaagagctgcatatgtgtatgagcattggaaagcta 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18786150 acttagggattaagagagtgaaaatacgggtttcccccaatctcaaaggaagatcctccagatgtaagagctgcatatgtgtatgagcattggaaagcta 18786051  T
Q  269 ctagagaaaccatcaagtagagtgagatcctagacaccatatatggtggttctcttccagttg 331  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18786050 ctagagaaaccatcaagtagagtgagatcccagacaccatatatggtggttctcttccagttg 18785988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 18771560 - 18771367
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||| ||||||||||||||||||||| ||||    
T  18771560 gacatcattacaaaacaatagaaaaagatactctagagagaacaaaatgaggatggagatcatctaccttgaagctcctgatgcttgaccattgccttgt 18771461  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaatacgggttt 201  Q
    | | |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||    
T  18771460 atcgatggatttctaaatgaataaaagagtgtgcaagggtctctattaagagtgtatgattactgagggattaagagagtgaaaataggggttt 18771367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 11438026 - 11437841
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| |||| |||||| ||||| |||| ||| ||||||||| |  || | ||||||||||||| ||||| ||| |||||||||||| |||| |||||    
T  11438026 acatcattacaagacaataaaaaaacataccctacagagaacaagagaaggatggagatcctctgctttgaagctcatgatgcttgacccttgccttgta 11437927  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    | | | ||||||||||||||||||| |||||| || |||||  ||| ||  || || ||||||||||| |||| ||||||||||||    
T  11437926 ctactagctttctaaatgaataaaatagtgtgtaatggtctatatttatgatgcatcattacttaggggttaacagagtgaaaata 11437841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 30544248 - 30544171
Alignment:
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    ||||||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||| |||||||||||||||||    
T  30544248 tttctaaatgaataaaagagtgtgcaatgatctctatttatagtgtatgattacttaggggttaagagagtgaaaata 30544171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 30850549 - 30850681
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggc 116  Q
    ||||||||||||||||| |||| ||||||||||||| | ||| | |||||||||||||||| || || || ||| |||||| |||| |||||||  | ||    
T  30850549 acaaaacaatagaaaaacataccctagagagaacaataggaggatggagatcctctgccttaaatct-cttatgtttgacccttgccttgtaccgctagc 30850647  T
Q  117 tttctaaatgaataaaagagtgtgcaagggtctc 150  Q
    ||||| ||||||||||||| | |||| |||||||    
T  30850648 tttctgaatgaataaaagaatttgcatgggtctc 30850681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 27085069 - 27085207
Alignment:
Q  19 aaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctt 118  Q
    ||||||||| ||||| ||||| ||  |||||||| | ||| | |||||||||||| ||||||  |  |||||||||||| |||  ||||||| | | |||    
T  27085069 aaaacaatataaaaacatact-taatgagaacaagaggaggatggagatcctctgtcttgaagttt-tgatgcttgacccttgacttgtacctaag-ctt 27085165  T
Q  119 tctaaatgaataaaagagtgtgcaagggtctcaattaatagt 160  Q
    | |||||||||||||||||||||| ||||||| ||| |||||    
T  27085166 tttaaatgaataaaagagtgtgcaggggtctctatttatagt 27085207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 16051786 - 16051924
Alignment:
Q  9 acatcatcacaaaacaatagaaaaag-atactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    ||||||| |||||||||||||||||  |||  ||||||||||||||||||| |  |||||||||| ||||  |||| || ||| |||||| || | |||     
T  16051786 acatcataacaaaacaatagaaaaaacatatcctagagagaacaaaatgaggatagagatcctctaccttagaact-ctaatggttgaccctttccttga 16051884  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggt 147  Q
    |||  | ||||||| ||||||||| |  ||||||||||||    
T  16051885 accgttagctttcttaatgaataagaatgtgtgcaagggt 16051924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 12774352 - 12774422
Alignment:
Q  10 catcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaa 80  Q
    |||||| ||||||||||||||||| ||| |||||||||||||| |  |||| | | ||| |||||||||||    
T  12774352 catcattacaaaacaatagaaaaacataatctagagagaacaagagtagaaggaaaatcttctgccttgaa 12774422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 13305027 - 13304981
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaa 54  Q
    |||||||| | ||||||||||||||| |||| |||||||||||||||    
T  13305027 gacatcataagaaaacaatagaaaaatataccctagagagaacaaaa 13304981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 23893716 - 23893651
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactc 84  Q
    |||||||||||||| ||  ||||||||||||||||| | ||| | |||||||  ||||||||||||||    
T  23893716 acaaaacaatagaataacctactctagagagaacaataggaggatggagatc--ctgccttgaaactc 23893651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 19602404 - 19602211
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| ||||||||||||||||| |||| || |||| ||||||| ||  |  || ||||||||||||||| ||||||||||||| || |||| ||||    
T  19602404 gacatcattacaaaacaatagaaaaacataccctcgagataacaaaaggatgatagaaatcctctgccttgaagctcctgatgcttggcccttgccttgt 19602305  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaatacgggttt 201  Q
    |||  | ||||||| |||||| |||||||||| |||||||||| ||| ||| || |||||||||| ||| ||||||||||||||||| ||||||    
T  19602304 accgctagctttctgaatgaaaaaaagagtgtacaagggtctctatttataatgcatgattacttcggggttaagagagtgaaaataggggttt 19602211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 29438050 - 29437864
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| ||||||||||||||||| |||| ||||||| ||||| |  |  | ||||||||||  ||||||| ||| | |||||||||| |||| ||||    
T  29438050 gacatcattacaaaacaatagaaaaacataccctagagataacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgt 29437951  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    |||| | | ||||| |||||||| ||||||||||||| ||||| ||| |||||| |||||||||||||| |||||||||||||||||    
T  29437950 accactagttttctgaatgaatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 29437864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 23354178 - 23354039
Alignment:
Q  45 gagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaag 144  Q
    |||||||| ||||| | ||||||||||||| ||||| ||| ||||| |||||| |||| ||||||   ||||||||| ||||||||||||||| ||| ||    
T  23354178 gagaacaagatgaggatggagatcctctgctttgaagctc-tgatgtttgacctttgccttgtactgttggctttctgaatgaataaaagagtttgcgag 23354080  T
Q  145 ggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
     ||||  ||| ||| |  || ||||||||||| ||||||||    
T  23354079 agtctttatttataatacatcattacttaggggttaagaga 23354039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 33519659 - 33519483
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| | || |||||||||||| |||| | ||||||||||||| ||  |  || ||| | ||||||||| ||| ||||| |||||| |||| || |    
T  33519659 gacatcattataagacaatagaaaaatatacccaagagagaacaaaaggatgatagatatcttttgccttgaagctc-tgatgtttgacccttgccttat 33519561  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||   | | ||||| |||||||||||||||||||||||||||  ||| ||||| ||| |||| |||||| ||| ||||    
T  33519560 actgctagatttctgaatgaataaaagagtgtgcaagggtctttatttatagtatatcattaattaggggttacgaga 33519483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 10577085 - 10576990
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgcttt 105  Q
    ||||||| ||||||||||| ||||| |||| |||||||| |||| | ||| | ||||||||||| |||| || || ||||||||||||| |||||||    
T  10577085 acatcattacaaaacaatataaaaacataccctagagaggacaagaggaggagggagatcctcttccttcaagct-ctgatgcttgacccttgcttt 10576990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 26160335 - 26160265
Alignment:
Q  115 gctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||||| |||||||||||||||||||||| ||||| ||| |||| | || |||||||| || ||||||||    
T  26160335 gctttctgaatgaataaaagagtgtgcaagagtctctatttatagggcataattacttatgggttaagaga 26160265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 31859477 - 31859546
Alignment:
Q  117 tttctaaatgaataaaagagtgtgcaagggtctc-aattaatagtgtatgattacttagggattaagaga 185  Q
    ||||| |||||||||||||||||||||||||||| | |||  |||| || ||||||||||| ||||||||    
T  31859477 tttctgaatgaataaaagagtgtgcaagggtctctacttataagtgcatcattacttaggggttaagaga 31859546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 17184173 - 17184221
Alignment:
Q  63 gagatcctctgccttgaaactcctgatgcttgaccattgctttgtacca 111  Q
    |||||||||||||||||| ||||||||| |||||| |||| ||||||||    
T  17184173 gagatcctctgccttgaagctcctgatgtttgacctttgccttgtacca 17184221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 4733322 - 4733180
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggc 116  Q
    ||||||||||||||||| ||||  |||| ||||||| | ||| | ||||||| ||||||||||| || || | | |||||| |||  |||||| | | ||    
T  4733322 acaaaacaatagaaaaacataccttagaaagaacaacaagaggatggagatcatctgccttgaagct-ctaacgtttgacccttgtcttgtactagtagc 4733224  T
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagt 160  Q
    ||||| | ||||||||| ||||| ||||||| || ||| |||||    
T  4733223 tttctgattgaataaaacagtgtccaagggtttctatttatagt 4733180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 12028483 - 12028528
Alignment:
Q  116 ctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtg 161  Q
    |||||| |||||||||||||||||||||| ||||| ||| ||||||    
T  12028483 ctttctgaatgaataaaagagtgtgcaagagtctctatttatagtg 12028528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 18444832 - 18444745
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgacc 97  Q
    ||||||| ||||||||| | ||||| |||| |||  |||||||| | ||| | |||||||||| ||||||||||| ||||| |||||||    
T  18444832 acatcattacaaaacaacataaaaacataccctaatgagaacaagaggaggatggagatcctccgccttgaaact-ctgattcttgacc 18444745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 21549277 - 21549091
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| | ||| | |||||||||||||||||||  |||||||||||||||||||  ||||    
T  21549277 gacatcattacaaaacaatagaaaaacataccctagagagaacaagaggaggatggagatcctctgccttgaagatcctgatgcttgaccattgacttgt 21549178  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    ||   | | ||| | |||||||||||||||||||||||||||  ||| ||| || ||||||||||  || |||||| ||| ||||||    
T  21549177 actgctagatttttgaatgaataaaagagtgtgcaagggtctttatttatattgcatgattacttttgggttaagaaagtaaaaata 21549091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 52270708 - 52270901
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||| | ||| | | ||||||| |||| |||| ||||||||||||| || |||| ||||    
T  52270708 gacatcattacaaaacaatagaaaaacatcatctagagagaacaagaggaggatgaagatcctttgccgtgaagctcctgatgcttggcccttgccttgt 52270807  T
Q  108 accaatggctttctaaatgaataaaagagtgtg-------caagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    |||  | ||||||| ||||||||||||| ||||        ||| ||||| ||| ||| || |||||||||||||| |||||||||||||||||    
T  52270808 accgctagctttctgaatgaataaaagattgtgtaacagtgaagagtctctatttatattgcatgattacttaggggttaagagagtgaaaata 52270901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 25778361 - 25778199
Alignment:
Q  11 atcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtacc 110  Q
    ||||| ||||||||||||||||| |||| ||||||||||| | | ||| | |||||| |||| ||||||| |||| |||| |||||| |||| ||||||     
T  25778361 atcattacaaaacaatagaaaaacataccctagagagaacgagaggaggatggagatgctcttccttgaagctccagatgtttgacccttgccttgtact 25778262  T
Q  111 aatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattactta 173  Q
      |  |||| ||||||||||||||||||||||| |||||| ||| |||||| || ||||||||    
T  25778261 gttatctttataaatgaataaaagagtgtgcaaaggtctctatttatagtgcattattactta 25778199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 15298359 - 15298534
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||| ||||||  |||| ||||||||||||| | |||   | | ||||||||||||| ||||| ||||| ||||| ||||| |||||    
T  15298359 acatcattacaaaacaaaagaaaagcataccctagagagaacaagaggagggtgaatatcctctgccttggaactc-tgatgtttgacaattgcgttgta 15298457  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||  | ||||||| |||| |||||| |||||| || |||||||||| ||| |  || ||||||||||| ||||||||    
T  15298458 ccgctagctttcttaatggataaaatagtgtggaaaggtctcaatttataatacatcattacttaggggttaagaga 15298534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 25731096 - 25730934
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggc 116  Q
    ||||||||||| ||||| |||| |||||||||||   | ||| | | ||||||||| |||| || ||||||||| || ||| |||| ||||||   |  |    
T  25731096 acaaaacaatataaaaacataccctagagagaacgggaggaggatgaagatcctcttcctttaagctcctgatgttttacccttgccttgtactgttatc 25730997  T
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggatt 179  Q
    ||| ||||||||||||||||| ||||| |||||| ||| |||||| || ||||||||||||||    
T  25730996 tttataaatgaataaaagagtatgcaaaggtctctatttatagtgcattattacttagggatt 25730934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 26853914 - 26853993
Alignment:
Q  115 gctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    ||||||| ||||||||||| ||||| |||||||||| ||| ||||||||| ||||||||||| || ||| ||||||||||    
T  26853914 gctttctgaatgaataaaatagtgttcaagggtctctatttatagtgtatcattacttaggggttgagatagtgaaaata 26853993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 34533257 - 34533082
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    |||||||  ||||||||| |||||| |||| ||||||||||||| | ||| | | ||||||||| ||||||||||  ||||||||||||  ||| ||| |    
T  34533257 acatcataccaaaacaatcgaaaaacataccctagagagaacaagaggaggatgaagatcctcttccttgaaact-atgatgcttgacccgtgcattgaa 34533159  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |   | | ||||||||||||||| |  ||||||||| ||||| ||| |||   ||||||||||||| | ||||||||    
T  34533158 ctgttagttttctaaatgaataagaatgtgtgcaagagtctctatttatatcatatgattacttagagtttaagaga 34533082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 194
Target Start/End: Original strand, 25665306 - 25665460
Alignment:
Q  40 ctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgt 139  Q
    ||||||||||||| | ||| | ||||||| ||||||||||| ||| |||||||||||| |||  ||||||   | ||||| | ||||||| ||| | |||    
T  25665306 ctagagagaacaagaggaggatggagatcatctgccttgaagctcatgatgcttgacccttgtcttgtactgctagctttatgaatgaattaaaaattgt 25665405  T
Q  140 gcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    ||||||||||| ||| | |||| ||| ||||||| || || | || |||||||||    
T  25665406 gcaagggtctctatttacagtgcatgcttacttatgggttcaaagtgtgaaaata 25665460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 23506403 - 23506218
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| || |||||||||||| || | ||| | ||||||||  ||||| ||| ||| | |||||  ||  |||| |||||    
T  23506403 acatcattacaaaacaatagaaaaacattctctagagagaataagaggaggatggagatccgatgcctcgaagctcttaatgctaaacacttgccttgta 23506304  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    |   |  |||||| || ||||| ||   ||| |||||||||| ||| |||||| || ||||||||||| | |||||||||||||||    
T  23506303 ctgctaactttctgaaagaatagaattctgtccaagggtctctatttatagtgcattattacttagggctcaagagagtgaaaata 23506218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 27460472 - 27460540
Alignment:
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||| || ||||||||||||||| ||||||||| ||| |||||| || ||||||||||| ||||||||    
T  27460472 tttctgaaagaataaaagagtgtgtaagggtctctatttatagtggatcattacttaggggttaagaga 27460540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 11984708 - 11984846
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    |||||||| |||||||| ||||||| |||   |||||||||||| | ||| | |||||||||||||||||  ||| ||||||||||||  |||| ||| |    
T  11984708 acatcatcgcaaaacaaaagaaaaatatatcttagagagaacaagaggaggatggagatcctctgccttg-gact-ctgatgcttgacatttgccttgca 11984805  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtct 149  Q
    ||  | ||||||| ||||||||| |  ||||||||| ||||    
T  11984806 ccgttagctttctgaatgaataagaatgtgtgcaagtgtct 11984846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 50047714 - 50047639
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactc 84  Q
    ||||||| ||||||||||| ||||| |||| ||||||||||||| | ||| | |||||||| || ||||| |||||    
T  50047714 acatcattacaaaacaatataaaaacataccctagagagaacaagaggaggatggagatccccttccttggaactc 50047639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 31314161 - 31314044
Alignment:
Q  20 aaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggcttt 119  Q
    |||||||||||||| | ||  |||||||||||| ||| | | ||||||||||||||||| | || |||||| |||||| |  | |||||||  | |||||    
T  31314161 aaacaatagaaaaacaaaccatagagagaacaagatggggatggagatcctctgccttgcagct-ctgatggttgaccctaaccttgtaccgctagcttt 31314063  T
Q  120 ctaaatgaataaaagagtg 138  Q
    || ||| ||||||||||||    
T  31314062 ctgaataaataaaagagtg 31314044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 23224003 - 23223918
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgacc 97  Q
    ||||||| ||||||||||||||||| |||| |||||||  || | | ||| | | ||||||||||||||| |||| |||||||||||||    
T  23224003 acatcattacaaaacaatagaaaaacataccctagaga--actagaggaggatgaagatcctctgccttggaact-ctgatgcttgacc 23223918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 30676053 - 30675980
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactc 84  Q
    ||||||| ||||||||||||||||| |||| |||||||||  || | ||| | |||||||  ||||||||||||||    
T  30676053 acatcataacaaaacaatagaaaaacataccctagagagactaagaggaggatggagatc--ctgccttgaaactc 30675980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 5636833 - 5636657
Alignment:
Q  9 acatcatcacaaaacaata-gaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    ||||||| ||||||||||| |||||| |||| ||||||||||||| | |||   ||||||| ||||||||||| ||  ||||||||||||||||| ||||    
T  5636833 acatcattacaaaacaataagaaaaaaataccctagagagaacaagaggaggttggagatcatctgccttgaagctt-tgatgcttgaccattgccttgt 5636735  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    || | | ||||||| |||||||||||| ||||||||||||||| ||| |||||| || ||||||||| ||||||||||    
T  5636734 actactagctttctgaatgaataaaagtgtgtgcaagggtctctatttatagtgcatcattacttagtgattaagaga 5636657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 24596482 - 24596668
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| | ||||||||| ||||| |||| ||||||||||||| | ||  |  |||||| ||||||||||| |||||||||||||||| |||| ||||    
T  24596482 gacatcattataaaacaatataaaaacatacactagagagaacaagaggatgatagagatcatctgccttgaagctcctgatgcttgacccttgccttgt 24596581  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    ||||   ||||||| ||||||||||||||||||||| |||||| ||| ||| || |||||||  || || |||||| ||||||||||    
T  24596582 accatcagctttctgaatgaataaaagagtgtgcaatggtctctatttataatgcatgattatatacgggttaagatagtgaaaata 24596668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 4829378 - 4829270
Alignment:
Q  86 tgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |||||||||||| |||| |||||||  | ||||||||||||||||||| | |||||| | ||||| ||| |||||| |||| ||||||||| ||||||||    
T  4829378 tgatgcttgacccttgccttgtaccgctagctttctaaatgaataaaataatgtgcatgagtctctattcatagtggatgactacttaggggttaagaga 4829279  T
Q  186 gtgaaaata 194  Q
    |||||||||    
T  4829278 gtgaaaata 4829270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 30406145 - 30406007
Alignment:
Q  64 agatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgta 163  Q
    ||||| |||| |||||  ||||||||||||||| ||| | |||||||  | ||||| | ||||||||||||  ||||||||||| || ||| ||||||||    
T  30406145 agatcatctggcttgatgctcctgatgcttgactattaccttgtaccgctagctttatgaatgaataaaagtttgtgcaagggtttctatttatagtgta 30406046  T
Q  164 tgattacttagggattaagagagtgaaaatacgggtttcc 203  Q
    ||||||| |||  |||||||||||||||||| ||||||||    
T  30406045 tgattacatagcaattaagagagtgaaaata-gggtttcc 30406007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 9552774 - 9552587
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttg- 106  Q
    ||||||||||||||| |||||||||| |||| ||||||||||||| | ||  | ||||||||||| ||||||| ||| |||||||||||| |||| |||     
T  9552774 gacatcatcacaaaataatagaaaaatataccctagagagaacaagaggatgatggagatcctcttccttgaagctcttgatgcttgacccttgccttgc 9552675  T
Q  107 taccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
     |||  | | ||||| ||||| | |||| |||||||| |||||| |||  ||||  | | || ||||||| || ||||||||||||||    
T  9552674 caccgttagttttctgaatgagttaaagtgtgtgcaacggtctctatttgtagttcaaggtttcttaggggttgagagagtgaaaata 9552587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 4091983 - 4092140
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggc 116  Q
    ||||||||||||||||| |||| ||||||||||||| | ||  | ||||||||||||||||| |||  ||||||||||||| |||| ||  |||  | ||    
T  4091983 acaaaacaatagaaaaacatac-ctagagagaacaagaggaagatggagatcctctgccttggaacctctgatgcttgacccttgccttcaaccgctagc 4092081  T
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagg 175  Q
    ||||| ||||||||| |  ||||| ||||||||| ||| |||   ||||||||||||||    
T  4092082 tttctgaatgaataataatgtgtgaaagggtctctatttataacatatgattacttagg 4092140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 22334819 - 22334948
Alignment:
Q  56 gagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaatta 155  Q
    ||||| |||||||||||||||  ||  || |||||||||||| |||| |||||||| | ||||||| ||| ||||||||||||| ||| | |||  |||     
T  22334819 gagaatggagatcctctgcctgaaagttcttgatgcttgacccttgccttgtaccactagctttctgaattaataaaagagtgttcaatgatctttattt 22334918  T
Q  156 atagtgtatgattacttagggattaagaga 185  Q
    |||||| || ||||||||||| ||||||||    
T  22334919 atagtgcatcattacttaggggttaagaga 22334948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 5312265 - 5312383
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| |||||||||| |||||| |||| ||||||||||||| | ||| | ||||||| | | ||||||||||||| ||| |||||  |||| ||||    
T  5312265 gacatcattacaaaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgactcttgccttgt 5312364  T
Q  108 accaatggctttctaaatg 126  Q
    |||| | ||||||| ||||    
T  5312365 accactagctttctcaatg 5312383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 9801171 - 9800976
Alignment:
Q  7 ggacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttg 106  Q
    ||||||||| |||||| ||| |||||| | || ||||||||||||| | ||| | ||||||||||| |||| || ||| |||||||||||| |||| |||    
T  9801171 ggacatcattacaaaataattgaaaaacacaccctagagagaacaagaggaggatggagatcctcttccttaaagctcttgatgcttgacccttgccttg 9801072  T
Q  107 -taccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaatacgggttt 201  Q
      |||  | | ||| | ||||| | |||| || ||||| |||||| ||| |||||  | | || ||||||| ||||||||||||||||| ||||||    
T  9801071 ccaccgctagttttttgaatgagttaaagtgtatgcaacggtctctatttatagttcaaggtttcttaggggttaagagagtgaaaataggggttt 9800976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 9760728 - 9760534
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattg-ctttg 106  Q
    |||||||| |||||| |||||||||| ||||  |||||||||||| | ||| | ||||||||||| ||||||| ||| ||||| |||||| ||| |||      
T  9760728 gacatcattacaaaataatagaaaaacataccttagagagaacaataggaggatggagatcctcttccttgaagctcttgatggttgacccttgtcttgc 9760629  T
Q  107 taccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaatacgggttt 201  Q
     |||  | | ||| | ||||| | |||| || ||||| |||||| ||| |||||  | | || ||||||| ||||||||||||||||| ||||||    
T  9760628 cacccctagttttttgaatgagttaaagtgtatgcaacggtctctatttatagttcaaggtttcttaggggttaagagagtgaaaataggggttt 9760534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 18467135 - 18466995
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| |||| | || || | ||| | ||| | ||| ||||||| ||||||| ||  |||| ||||||| |||  |||||    
T  18467135 acatcattacaaaacaatagaaaaatataccccagtgaaagcaagaggaggagggaaatcctctaccttgaagcta-tgattcttgacctttgtcttgta 18467037  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctc 150  Q
    ||  | ||||||| ||||||||||| ||||||||| ||||||    
T  18467036 ccgttagctttctcaatgaataaaatagtgtgcaaaggtctc 18466995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 26298405 - 26298220
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| |||||||||||||| || |||||  ||||| ||||| | ||| | | ||||||||| ||||||| ||| |||||||||||| |||  |||||    
T  26298405 acatcattacaaaacaatagaataacatacttgagagacaacaagaggaggatgaagatcctcttccttgaagctcatgatgcttgacccttgacttgta 26298306  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
     || | ||||||| ||| |||||||||||||||||| ||||| ||| ||| || |||||| ||||||| ||||||||| |||||||    
T  26298305 gcactagctttctcaattaataaaagagtgtgcaagagtctctatttataatgcatgattccttaggggttaagagagggaaaata 26298220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 18474831 - 18474636
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| ||||| ||||||||||| | || || ||||||| || | ||| | |||||| ||||||||||||||||||||||||||||| |||| ||||    
T  18474831 gacatcattacaaaccaatagaaaaataaaccctggagagaataagaggaggatggagatactctgccttgaaactcctgatgcttgacccttgccttgt 18474732  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattactta--gggattaagagagtgaaaatacgggttt 201  Q
    |||  | ||||||  ||||||| ||||||||| ||   ||||| ||| ||| || |||||||| ||  ||||||||||||||||||||| ||||||    
T  18474731 acctctagctttcagaatgaatgaaagagtgttcatttgtctctatttataatggatgattacgtagggggattaagagagtgaaaataggggttt 18474636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 19218684 - 19218856
Alignment:
Q  12 tcatcacaaaacaatagaaaaag-atactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtacc 110  Q
    |||| |||||||||||||||||| |||||||||||||||||| | ||| | |||||| |||||||||| |||| ||||||||||||| |||  ||| |||    
T  19218684 tcataacaaaacaatagaaaaaggatactctagagagaacaagaggaggatggagatactctgccttg-aact-ctgatgcttgacccttgtcttgaacc 19218781  T
Q  111 aatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
      | ||||| | ||||||||| |  |||| |||||||||| ||| ||||  |||||||||||| || ||||||||    
T  19218782 gttagctttattaatgaataagaatgtgtacaagggtctctatttatagaatatgattacttaaggtttaagaga 19218856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 10342383 - 10342207
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| |||||| |||||||||| |||| ||||||||||||| | ||| | ||| ||| ||||||||||||   |||||| |||||| | |||||| |    
T  10342383 acatcataacaaaataatagaaaaatataccctagagagaacaagaggaggatggaaatcatctgccttgaaaactctgatgtttgaccctcgctttgaa 10342284  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||| |  |||||| ||| ||||| |   |||||||| ||||  ||| |||||  |||||||||||||| ||||||||    
T  10342283 ccactaactttctgaattaataataatatgtgcaagagtctatatttatagtaaatgattacttagggtttaagaga 10342207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 19285668 - 19285532
Alignment:
Q  64 agatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgta 163  Q
    ||||||||||||||||| |||| |||| |||||| |||| |||||||| | ||||||| ||||||||||||||||| ||| |||||  ||| |||||| |    
T  19285668 agatcctctgccttgaagctcc-gatgtttgacccttgccttgtaccattagctttctgaatgaataaaagagtgt-caaaggtctttatttatagtgca 19285571  T
Q  164 tgattacttagggattaagagagtgaaaatacgggtttc 202  Q
    | ||||||| ||| ||| |||| | || ||| |||||||    
T  19285570 tcattacttcggggttaggagaataaagataggggtttc 19285532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 21828686 - 21828855
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactc--tagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgcttt 105  Q
    |||||||| || |||||||||||||| | | ||  |||||||||||| | ||  | ||||||||| ||||||||| ||| | |||||||||| |||| ||    
T  21828686 gacatcattaccaaacaatagaaaaaaaaattccctagagagaacaagaggaagatggagatcctttgccttgaagctctt-atgcttgacccttgcatt 21828784  T
Q  106 gtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttaggg 176  Q
    || ||  | ||||||| |||||||||| || ||| |||||||||| ||| |||||  || |||||||||||    
T  21828785 gtgccgctagctttctgaatgaataaatgaatgtacaagggtctctatttatagttcatcattacttaggg 21828855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 33578301 - 33578223
Alignment:
Q  92 ttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattac 170  Q
    ||||||||||| ||| |||  | |||||||||||||||||||| ||||||||| ||||| ||| ||||||||| |||||    
T  33578301 ttgaccattgccttgaaccgctagctttctaaatgaataaaagtgtgtgcaagtgtctctatttatagtgtatcattac 33578223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 194
Target Start/End: Original strand, 19542596 - 19542765
Alignment:
Q  26 tagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaat 125  Q
    |||||||| |||| ||||||||||||| | ||| | |||||| ||||||||| |||||  | |||||||||| |||| |||||||    ||||||  |||    
T  19542596 tagaaaaatataccctagagagaacaagaggaggatggagatactctgccttaaaacttataatgcttgacccttgccttgtacctcaagctttcagaat 19542695  T
Q  126 gaataaaagagtgtgcaagggtctcaattaatagtgtatgattactta-gggattaagagagtgaaaata 194  Q
    |||| ||||||||| || | ||||| ||| ||| || ||||| |  || ||| |||||||||||||||||    
T  19542696 gaatgaaagagtgttcatgtgtctctatttataatgcatgatcatatacggggttaagagagtgaaaata 19542765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 11475481 - 11475312
Alignment:
Q  11 atcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtacc 110  Q
    ||||| ||||||||||| ||||| ||||  ||||||||||||  | || |   ||||||| | ||||||| ||  |||||||||| | |||| ||| |||    
T  11475481 atcattacaaaacaatataaaaacataccttagagagaacaaggtaaggataaagatcctttaccttgaagctt-tgatgcttgatccttgccttgcacc 11475383  T
Q  111 aatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaa 181  Q
      | ||||||| |||||||||||||||||||||| ||||| ||| ||| |  || ||||||||||| ||||    
T  11475382 gctagctttctgaatgaataaaagagtgtgcaagagtctctatttatattacatcattacttaggggttaa 11475312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 16970958 - 16970898
Alignment:
Q  125 tgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |||||||||| ||||| ||||||||| ||| ||||  ||||||||||||||| ||||||||    
T  16970958 tgaataaaagtgtgtgtaagggtctctatttatagcatatgattacttagggtttaagaga 16970898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 18066293 - 18066253
Alignment:
Q  12 tcatcacaaaacaatagaaaaagatactctagagagaacaa 52  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  18066293 tcataacaaaacaatagaaaaagatactctatagagaacaa 18066253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 22489678 - 22489729
Alignment:
Q  122 aaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattactta 173  Q
    |||||||||||| ||||||||| |||||| ||| |||||| |||||||||||    
T  22489678 aaatgaataaaatagtgtgcaatggtctctatttatagtgcatgattactta 22489729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 2729079 - 2729200
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| |||||||| |||||||| ||||  |||||||||||| ||||| | | ||| | ||||||||  |||| ||||||||||||| || | ||| |    
T  2729079 acatcataacaaaacagtagaaaaatataccatagagagaacaagatgaggatgaagaccatctgcctttgaact-ctgatgcttgacccttaccttgaa 2729177  T
Q  109 ccaatggctttctaaatgaataa 131  Q
    ||  | ||||||| |||||||||    
T  2729178 cctctagctttctgaatgaataa 2729200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 8226 - 8393
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggc 116  Q
    ||||||||||||||||| |||| ||||||||||||| | ||| | ||| ||||||| ||||| ||||| |||||||||||| |||| ||||| || | ||    
T  8226 acaaaacaatagaaaaacatacactagagagaacaagaggaggatggatatcctctaccttggaactc-tgatgcttgacccttgcgttgtaacattagc 8324  T
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||| |||||||||||  || |||||||||||| ||| ||||  ||| ||||||||||| | ||||||    
T  8325 tttctgaatgaataaaaatgtctgcaagggtctctatttatagcatattattacttagggttaaagaga 8393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 11256 - 11423
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggc 116  Q
    ||||||||||||||||| |||| ||||||||||||| | ||| | ||| ||||||| ||||| ||||  |||||||||||| |||| ||||| |  | ||    
T  11256 acaaaacaatagaaaaacatacactagagagaacaagaggaggatggatatcctctaccttggaactt-tgatgcttgacccttgccttgtaacgttagc 11354  T
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||| |||||||||||   |||||||||||||| ||| ||||  ||| ||||||||||  ||||||||    
T  11355 tttctgaatgaataaaaatatgtgcaagggtctctatttatagcatattattacttaggatttaagaga 11423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 18281714 - 18281884
Alignment:
Q  24 aatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaa 123  Q
    |||||||||| |||| ||||||||||||| | ||  | |||| |||||| ||||||| ||||||||| |||||  |||| ||| ||   | ||||||| |    
T  18281714 aatagaaaaatataccctagagagaacaagaggacgatggaggtcctctaccttgaagctcctgatgtttgacgtttgccttgcactgctagctttctga 18281813  T
Q  124 atgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    ||||| ||||||||||||||||||| | ||| ||| || |||||||||||||| ||||||||||| |||||    
T  18281814 atgaagaaaagagtgtgcaagggtcactatttatattgcatgattacttaggggttaagagagtggaaata 18281884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 18178766 - 18178591
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    ||||| || ||||||||||| ||||| |||| ||||||||||||| | ||| | | ||||||||  |||| || ||| ||||| ||||||||||| ||||    
T  18178766 gacattattacaaaacaataaaaaaa-ataccctagagagaacaagaggaggatgaagatcctccacctttaagctc-tgatgtttgaccattgccttgt 18178669  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |||| | ||||| | ||||||||||| |||||||||||||||| ||| ||| || || ||||||||||| ||||||||    
T  18178668 accattagctttttgaatgaataaaaaagtgtgcaagggtctctattgatattgcatcattacttaggggttaagaga 18178591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 23157379 - 23157455
Alignment:
Q  116 ctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaa 192  Q
    |||||| ||||||||||| ||||||||||||||||  || ||| || |||||||||||||| |||||||||||||||    
T  23157379 ctttctgaatgaataaaatagtgtgcaagggtctctttttataatgcatgattacttaggggttaagagagtgaaaa 23157455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 12265092 - 12265229
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| |||| |||||||||||||   ||||| | |||    || ||||||||||| ||||||||||||||| | ||| |    
T  12265092 acatcattacaaaacaatagaaaaatatacactagagagaacaa---gagaaggaagaaatcctaccttgaaactc-tgatgcttgaccattaccttgaa 12265187  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctc 150  Q
    ||  ||||||||||||||||||| |  |||||||||| ||||    
T  12265188 ccgctggctttctaaatgaataatattgtgtgcaaggatctc 12265229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 25368159 - 25368073
Alignment:
Q  116 ctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattactta-gggattaagagagtgaaaatacgggttt 201  Q
    |||||||||||||||||| ||||||||| |||||| ||| |||||| |||||||| ||  || ||||||||||||||||| ||||||    
T  25368159 ctttctaaatgaataaaatagtgtgcaatggtctctatttatagtgcatgattacgtacagggttaagagagtgaaaataggggttt 25368073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 16622134 - 16622300
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggc 116  Q
    ||||||||||||||||| |||| ||| ||||||||| |  || | ||||| |||| | |||| ||||| | |||||||||  |||| ||| |||| | ||    
T  16622134 acaaaacaatagaaaaacataccctaaagagaacaagagaaggatggagaccctcagtcttggaactc-taatgcttgactcttgccttgaaccactagc 16622232  T
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagag 184  Q
    ||| | ||| ||||||||  |||||||| ||||| ||| ||| ||||||||||||||| | |||||||    
T  16622233 tttatgaataaataaaagtatgtgcaagagtctctatttataatgtatgattacttagagtttaagag 16622300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 7742371 - 7742548
Alignment:
Q  7 ggacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttg 106  Q
    ||||||||| | |||||| |||||||| ||||  | |||| ||||| | ||  | | |||||||||| |||||| ||  ||||| |||||| |||| |||    
T  7742371 ggacatcattagaaaacagtagaaaaatataccattgagaaaacaagaggatgatgaagatcctctgacttgaagctt-tgatgtttgacccttgccttg 7742469  T
Q  107 taccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||| |  |||| | ||||| |||||||||||||||||||||| ||| ||| || || ||| ||||||| ||||||||    
T  7742470 taccactaactttttgaatgattaaaagagtgtgcaagggtctctatttataatgcatcattgcttaggggttaagaga 7742548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 31340839 - 31341012
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| |||    ||||||||||| | ||| |  |||||||||||||||||| || | |||| |||||| ||||||||||    
T  31340839 acatcattacaaaacaatagaaaaacatata--agagagaacaagaagaggattgagatcctctgccttgaagcttc-gatgtttgacccttgctttgta 31340935  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
        | ||||||  |||||||  ||||||||||||||||||| ||| |||||  |  ||||||||| |||| |||||    
T  31340936 tatctagctttcagaatgaatttaagagtgtgcaagggtctctatttatagtacaccattacttagagatttagaga 31341012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 20695256 - 20695093
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| |||| |||||||||| || | ||| | | ||||||  |||||||||  | | ||||||||||| |||| || ||    
T  20695256 acatcattacaaaacaatagaaaaacataccctagagagaaaaagaagaggatgaagatccattgccttgaagttgc-gatgcttgacccttgccttcta 20695158  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattactta 173  Q
    ||| | ||||||| ||||||| |||  || |||||| ||||| ||| |||||  || ||||||||    
T  20695157 ccactagctttctgaatgaatgaaaaggtttgcaagagtctctatttatagtacatcattactta 20695093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 19763395 - 19763517
Alignment:
Q  25 atagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaa 124  Q
    |||||||||  ||| || |||||||||| | ||| | | ||||||||||||||||| ||  ||||| |||||| |||| |||||||| | ||||| | ||    
T  19763395 atagaaaaacttacccttgagagaacaagaggaggatgaagatcctctgccttgaagctt-tgatgtttgacccttgccttgtaccactagctttttgaa 19763493  T
Q  125 tgaataaaagagtgtgcaagggtc 148  Q
    |||||||||||||||  |||||||    
T  19763494 tgaataaaagagtgtataagggtc 19763517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 20084122 - 20083952
Alignment:
Q  10 catcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtac 109  Q
    |||||| |||||| |||| ||||| |||| ||||||||||||| | ||  | |  |||| ||| |||||||  || |||||||||||| || ||||||||    
T  20084122 catcattacaaaataatataaaaacataccctagagagaacaacaggatgatgaggatcttcttccttgaagttc-tgatgcttgaccttttctttgtac 20084024  T
Q  110 caatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaa 181  Q
    |  | |||||||||| |||||||||||| || |||||| || ||| ||| |  || ||||||||||| ||||    
T  20084023 ctctagctttctaaaagaataaaagagtatgaaagggtatctatttatattacatcattacttaggggttaa 20083952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 17381492 - 17381560
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgcctt 77  Q
    ||||||| | ||||||||| ||| | |||| ||||||||||||||| ||| | ||||||||||||||||    
T  17381492 acatcattataaaacaatataaatacataccctagagagaacaaaaggaggatggagatcctctgcctt 17381560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 22930591 - 22930523
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgcctt 77  Q
    ||||||| ||||||||||||||||| |||  ||||||| ||||||| ||| | ||||||||||| ||||    
T  22930591 acatcattacaaaacaatagaaaaacataacctagagataacaaaaggaggatggagatcctctacctt 22930523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 25594141 - 25594316
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| |||   |||||||||||| | ||| | | ||| ||||| ||||| | || |||||| || ||| |||| ||| |    
T  25594141 acatcataacaaaacaatagaaaaacatatcttagagagaacaagaggaggatgaagaccctcttccttggagct-ctgatgtttaacccttgccttgaa 25594239  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||| | ||||| ||||||||||| |   ||| ||||||| || ||| ||||  |||| |||||||||| ||||||||    
T  25594240 ccactagctttataaatgaataataatatgttcaagggtgtctattgatagcatatgcttacttagggtttaagaga 25594316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 22230268 - 22230235
Alignment:
Q  117 tttctaaatgaataaaagagtgtgcaagggtctc 150  Q
    ||||||||||||||||| ||||||||||||||||    
T  22230268 tttctaaatgaataaaatagtgtgcaagggtctc 22230235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 23125496 - 23125565
Alignment:
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagag 186  Q
    ||||| ||||||||||| | |||||||||||||| ||| ||||    || ||||||||||||||||||||    
T  23125496 tttctgaatgaataaaatattgtgcaagggtctctatttatagccattggttacttagggattaagagag 23125565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 24131180 - 24131080
Alignment:
Q  85 ctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagag 184  Q
    ||||||||||||| ||||  |||| || | ||||||||||||| |||| | || || ||||||||| ||| |||||  || ||||| ||||| |||||||    
T  24131180 ctgatgcttgacccttgccatgtatcactagctttctaaatgattaaaggtgtatgtaagggtctctatttatagttcatcattacatagggtttaagag 24131081  T
Q  185 a 185  Q
    |    
T  24131080 a 24131080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 25460545 - 25460368
Alignment:
Q  11 atcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtacc 110  Q
    ||||| ||||||||||||||||| |||| ||||||||||||| | ||    ||| ||||| |||||       ||||||| |||||| |||| |||||||    
T  25460545 atcattacaaaacaatagaaaaacatacactagagagaacaagaggatggtggatatcctttgcct-------cctgatgtttgacccttgccttgtacc 25460453  T
Q  111 aatg-gctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
     ||  ||||||| ||| ||||||||| |||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  25460452 cattagctttctgaataaataaaagattgtgaaaaggtctctatttatagtgtatgattacttagggattaagagagtgaaaata 25460368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 17884052 - 17884202
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| |||| ||||| || |||| | ||  || || ||||||||||||||| ||| |||||||||||| |||| |||||    
T  17884052 acatcattacaaaacaatagaaaaacataccctagaaaggacaagaggatgacagaaatcctctgccttgaatctc-tgatgcttgacccttgccttgta 17884150  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagt 160  Q
    | | | ||||||||||||||||||||  ||||||| |||||| ||| |||||    
T  17884151 ctactagctttctaaatgaataaaagtatgtgcaatggtctctatttatagt 17884202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 27917552 - 27917672
Alignment:
Q  51 aaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctc 150  Q
    |||||||| | ||||||||||| || |||| |||||||||||||||| |||| |||||||  | ||||||| ||||||||||| ||||||||||||||||    
T  27917552 aaaatgaggatggagatcctctaccatgaagctcctgatgcttgacccttgccttgtaccgctagctttctgaatgaataaaatagtgtgcaagggtctc 27917651  T
Q  151 aattaatagtgtatgattactt 172  Q
     ||| |||||  ||||||||||    
T  27917652 tatt-atagtccatgattactt 27917672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 14921575 - 14921750
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| |||||||||| |||||| |||| ||||||||||||| |  || | |||  |||||||||||||||||| ||||| |||||| |||| || |    
T  14921575 gacatcattacaaaacaattgaaaaacataccctagagagaacaatagaaggatgga--tcctctgccttgaaactcgtgatgattgacctttgcctttt 14921672  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    |||  | || |||| ||||||| |||||||||||||||          |||||| ||||||||||| ||||||||||||||||||||    
T  14921673 accgctagccttctgaatgaatcaaagagtgtgcaagg---------tatagtgaatgattacttaaggattaagagagtgaaaata 14921750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 18819305 - 18819131
Alignment:
Q  10 catcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtac 109  Q
    |||||| ||||||||||||||||| |||| ||||  ||||||| | ||| |  ||||||||||| || ||| ||  ||||| ||||||||||| ||||||    
T  18819305 catcattacaaaacaatagaaaaacataccctagtaagaacaagaggaggatagagatcctctgtctggaagctt-tgatgtttgaccattgccttgtac 18819207  T
Q  110 caatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |  | ||||||| ||| ||||||||||| |||||||||||| ||| ||| |  || ||||||||||  ||||||||    
T  18819206 cgttagctttctgaataaataaaagagtttgcaagggtctctatttataatacatcattacttaggagttaagaga 18819131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 21504066 - 21504241
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| | |||| |||||||||| ||||| ||||| |||||| | ||| | | ||||| ||| ||||| ||||  |||||||||||| || | ||| |    
T  21504066 acatcattataaaataatagaaaaacatactttagagtgaacaataggaggatgaagatcatctaccttggaactt-tgatgcttgaccttttccttgaa 21504164  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||| | |||||||||||||||||||| ||||| |||||| || ||| |||   ||||||||||| ||  ||||||||    
T  21504165 ccattagctttctaaatgaataaaagtgtgtgtaagggtatctatttataacctatgattacttcggatttaagaga 21504241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 31262510 - 31262420
Alignment:
Q  86 tgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttaggg 176  Q
    |||| |||||| ||||| |||||||  | | ||||||||||||||||||||||| |||| ||||| ||| |||||| || |||||||||||    
T  31262510 tgatacttgactattgccttgtaccgttagatttctaaatgaataaaagagtgtacaagtgtctctatttatagtgcatcattacttaggg 31262420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 31274461 - 31274417
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaa 52  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  31274461 gacatcattacaaaacaatagaaaaatatactctagagagaacaa 31274417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 15454065 - 15454163
Alignment:
Q  86 tgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |||| |||||||||||  |||||||  | | |||||||||||||||| | ||||||||||||||| ||| |||||  || ||||||||||| ||||||||    
T  15454065 tgattcttgaccattgtcttgtacccctaggtttctaaatgaataaa-gtgtgtgcaagggtctcgatttatagttcatcattacttagggtttaagaga 15454163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 24188510 - 24188455
Alignment:
Q  139 tgcaagggtctcaattaatagtgtatgattacttagggattaagagagtgaaaata 194  Q
    |||||||||||| ||| || ||||||||||||| |||| |||||||||||||||||    
T  24188510 tgcaagggtctctatttattgtgtatgattactcaggggttaagagagtgaaaata 24188455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 18235807 - 18235900
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtacc 110  Q
    ||||||||||||||||| ||||  ||||||||| || | ||| | ||||||||||| |||| || ||| |||||||||||| || | |||||||    
T  18235807 acaaaacaatagaaaaacataccatagagagaataagaagaggatggagatcctcttccttaaatctcttgatgcttgacccttaccttgtacc 18235900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 21844367 - 21844485
Alignment:
Q  66 atcctctgccttgaaactcctgatgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatg 165  Q
    ||||||||||||||| ||| ||||||||||||  ||| ||| |||  | |||| || ||| |||||||| ||||||| |||| || ||| ||| || ||     
T  21844367 atcctctgccttgaagctc-tgatgcttgacccatgccttgaaccgctagcttactgaataaataaaagtgtgtgcaggggtttctatttatattgaatt 21844465  T
Q  166 attacttagggattaagaga 185  Q
    ||||||||||| ||||||||    
T  21844466 attacttagggtttaagaga 21844485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 24047855 - 24047785
Alignment:
Q  115 gctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||||| ||||||||| || |||||||||  |||| ||| |||||| || ||||||||||| ||||||||    
T  24047855 gctttctcaatgaataagagtgtgtgcaagaatctctatttatagtgcatcattacttagggtttaagaga 24047785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 25474521 - 25474459
Alignment:
Q  123 aatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||||||||| |||||||||||||||| ||| ||||  |  | |||||||||||||||||||    
T  25474521 aatgaataaaatagtgtgcaagggtctctatttatagcattaggttacttagggattaagaga 25474459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 25474632 - 25474591
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaa 49  Q
    |||||||| |||||||||||||||||||||| ||||| ||||    
T  25474632 gacatcataacaaaacaatagaaaaagataccctagaaagaa 25474591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 30999396 - 30999351
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaa 54  Q
    ||||||| | ||||||||||||||| |||| |||||||||||||||    
T  30999396 acatcataagaaaacaatagaaaaacataccctagagagaacaaaa 30999351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 18235919 - 18235987
Alignment:
Q  117 tttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |||||||||||||||||| |||| |||| ||||| ||  ||| || || ||||||||||| ||||||||    
T  18235919 tttctaaatgaataaaagtgtgtacaagagtctctatctataatgcatcattacttaggggttaagaga 18235987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 21842683 - 21842858
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||| ||||  |||| ||| ||||||| | | ||| | | | ||| ||||||||||| ||| |||||||||| |  ||| ||| |    
T  21842683 acatcattacaaaacaatataaaagcataccctaaagagaacgagaggagcatgtaaatcatctgccttgaagctc-tgatgcttgaaccatgccttgaa 21842781  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||  | ||||||| ||| |||||||| || ||||||||| ||  || ||| || || ||||||||||| ||||||||    
T  21842782 cctctagctttctgaataaataaaagtgtatgcaagggtttctgtttatattgaattattacttagggtttaagaga 21842858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 39732179 - 39732119
Alignment:
Q  115 gctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagg 175  Q
    ||||||| |||||||||||| ||||| ||| ||||| ||| |||||| || ||||||||||    
T  39732179 gctttctgaatgaataaaagtgtgtgaaagagtctctatttatagtgcatcattacttagg 39732119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 33231 - 33296
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctg 73  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33231 gacatcattacaaaacaatagaaaaagatactctagagagaacaaaatgaggacggagatcctctg 33296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 22263006 - 22262835
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgta 108  Q
    ||||||| ||||||||||||||||| ||||  |||||| || || | ||| | || |||||||| ||||||| ||  |||||||||||| |||| ||| |    
T  22263006 acatcattacaaaacaatagaaaaacatacattagagaaaataagaagaggatggcgatcctctaccttgaagcta-tgatgcttgacccttgccttgaa 22262908  T
Q  109 ccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaa 181  Q
    ||  | ||||||| |||||||||||| ||||||||| ||||| ||| || ||| || ||||||||||| ||||    
T  22262907 ccgctagctttctcaatgaataaaagtgtgtgcaagagtctctatttatggtgcatcattacttagggtttaa 22262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 16528279 - 16528129
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgt 107  Q
    |||||||| ||||||||||| ||||| |||| ||||||||||||| | ||| | | ||||||||||||||| ||||||  |||||||||| || | |||     
T  16528279 gacatcataacaaaacaatacaaaaacataccctagagagaacaagaggaggatgaagatcctctgccttggaactcc-aatgcttgaccctttccttga 16528181  T
Q  108 accaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatag 159  Q
    || | | ||||||||||||||||| |  |||||||| |||||| ||| ||||    
T  16528180 acaactagctttctaaatgaataataatgtgtgcaatggtctctatttatag 16528129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 15376063 - 15375982
Alignment:
Q  9 acatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatg 90  Q
    |||||||  ||||||||| |||||| |||| |||||||||||||  |||| |  |||||| ||||||||||| |||||||||    
T  15376063 acatcatttcaaaacaattgaaaaacataccctagagagaacaagttgaggattgagatcgtctgccttgaagctcctgatg 15375982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 32930036 - 32930133
Alignment:
Q  88 atgcttgaccattgctttgtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    |||||||| |||||  |||||||  | ||||||| |||||||||||| || |||||| ||||| ||| ||| || || |||||||||| |||||||||    
T  32930036 atgcttgatcattgtcttgtaccgctagctttctgaatgaataaaagtgtatgcaagagtctctatttataatggatcattacttaggaattaagaga 32930133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 12971952 - 12972011
Alignment:
Q  123 aatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaag 182  Q
    ||||||||||||||| |||||||||||| ||| |||||| || ||||| ||||| |||||    
T  12971952 aatgaataaaagagtctgcaagggtctctatttatagtgcatcattacgtaggggttaag 12972011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 15369331 - 15369294
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaa 54  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  15369331 acaaaacaattgaaaaacatactctagagagaacaaaa 15369294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 17198405 - 17198469
Alignment:
Q  121 taaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggattaagaga 185  Q
    ||||||||||||||||| |||||||||||| ||| | | |  || ||||||||||| ||||||||    
T  17198405 taaatgaataaaagagtatgcaagggtctctatttagaatacatcattacttaggggttaagaga 17198469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 12907 - 12714
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttg--accattgcttt 105  Q
    |||||||| |||||| |||||||||  || ||||||||||||||| | ||| | ||||||||||||| ||||| |   ||||||||   ||| |||| ||    
T  12907 gacatcattacaaaataatagaaaatcattctctagagagaacaagaggaggatggagatcctctgctttgaagccgatgatgctttgaacccttgcctt 12808  T
Q  106 gtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattactt-aggg----attaagagagtgaaaata 194  Q
    |||||  | ||||||| ||||||||||   ||||||||||||||| ||| |||||| || ||||||| ||||    ||||||||||||||||||    
T  12807 gtaccgctagctttctgaatgaataaactggtgtgcaagggtctctatttatagtgcataattactttaggggttaattaagagagtgaaaata 12714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 9048 - 8945
Alignment:
Q  220 gatcctccagatgtaagagctgcatatgtgtatgagcattggaaagctactagagaaaccatcaagtagagtgagatcctagacaccatatatggtggtt 319  Q
    |||||||  |||||||||||||||||||||||||||||||||||| ||||||| | |||| |||| || ||||| || | | |||| || |||||||| |    
T  9048 gatcctcttgatgtaagagctgcatatgtgtatgagcattggaaaactactaggggaaccttcaaatacagtgacattccaaacacaatgtatggtgggt 8949  T
Q  320 ctct 323  Q
    ||||    
T  8948 ctct 8945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 3774 - 3582
Alignment:
Q  8 gacatcatcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgct-tgacca-ttgcttt 105  Q
    |||||||| |||||| |||||||||  || ||||||||||||||| | ||| | ||||||||||||| ||||| |   ||||||| |||||  || |  |    
T  3774 gacatcattacaaaataatagaaaatcattctctagagagaacaagaggaggatggagatcctctgctttgaagccgatgatgctctgaccccttaccct 3675  T
Q  106 gtaccaatggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttaggg----attaagagagtgaaaata 194  Q
    |||||  | | ||| | ||||||||||  |||||||||||||||| ||| |||||| || |||||||||||    ||||||||||||||||||    
T  3674 gtaccgctagttttatgaatgaataaactagtgtgcaagggtctctatttatagtgcataattacttaggggataattaagagagtgaaaata 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 11159 - 11324
Alignment:
Q  14 atcacaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcctctgccttgaaactcctgatgcttgaccattgctttgtaccaat 113  Q
    |||||||||||||||||||| ||||  |||||||||||  | ||| | | | ||| ||||||||||| || |||| |||| ||| |||| |||||| |      
T  11159 atcacaaaacaatagaaaaatataccttagagagaacatgaggaggatgaaaatcatctgccttgaagct-ctgaagcttaacccttgccttgtactaca 11257  T
Q  114 ggctttctaaatgaataaaagagtgtgcaagggtctcaattaatagtgtatgattacttagggatta 180  Q
     ||||| | ||||||||||| |||||||||| ||||| ||| |||||  || |||||||| ||||||    
T  11258 agctttttgaatgaataaaaaagtgtgcaagtgtctctatttatagtacatcattacttaaggatta 11324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 227694 - 227747
Alignment:
Q  17 acaaaacaatagaaaaagatactctagagagaacaaaatgagaacggagatcct 70  Q
    |||||||||| |||||| |||||||||||||||||| | ||| | |||||||||    
T  227694 acaaaacaattgaaaaacatactctagagagaacaagaggaggatggagatcct 227747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University