View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18027_high_5 (Length: 310)
Name: NF18027_high_5
Description: NF18027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18027_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 48932452 - 48932155
Alignment:
| Q |
10 |
catcatcaacatagaggttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatc |
109 |
Q |
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| T |
48932452 |
catcatcaacatagagtttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaatc |
48932353 |
T |
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| Q |
110 |
taaactttcatatgcccacgtagtgaaatcagttatgggagctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgcttttg |
209 |
Q |
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| T |
48932352 |
taaactttcatatgcccacgtagtgaaatcagttatgggagctgaaaaaaaatggcttttcacgctattcagtgcagcagttttatctctaatgcttttg |
48932253 |
T |
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| Q |
210 |
ttaatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatacttcatctc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932252 |
ttaatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatacttcatctc |
48932155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 9392211 - 9392501
Alignment:
| Q |
9 |
acatcatcaacatagaggttcaaaaatccaagatcttcaacgacccagtaacgcaattagtttcaaaatccaaactttaaccaaacccacttctcaaaat |
108 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9392211 |
acatcatcaacatagagtttcaaaaatccaagatcttcaatgacccattaacacaaatagtttcaaaatccaaactttaaccaa-cccacttctcaaaat |
9392309 |
T |
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| Q |
109 |
ctaaactttcatatgcccacgtagtgaaatcagttatgggagctgnnnnnnnntggcttttcacgctattcagtgcagcagttttatctctaatgctttt |
208 |
Q |
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| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9392310 |
cgttgatttcatatgcccacatagtgaaattagttatgggagctgaaaaaaa-tggcttttcacgctattcagtgtagcagttttatctctaatgctttt |
9392408 |
T |
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| Q |
209 |
gttaatgtcttctttttcaactttcagttctcaaaagccttttccatcttttgttcaacatggttctcattaccctcctgcttttgcatactt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9392409 |
gttaatgtcttctttttcaactttcagttctcaaaagccttttccatctcttgttcaacatggttctcattaccctctggcttttgcatactt |
9392501 |
T |
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