View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18027_low_4 (Length: 479)
Name: NF18027_low_4
Description: NF18027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18027_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 42063220 - 42062752
Alignment:
| Q |
1 |
ccggtaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcaatggtttcacctgaaggggagttgaaatggtt |
100 |
Q |
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| T |
42063220 |
ccggcaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacctgaaggggagttgaaatggtt |
42063121 |
T |
|
| Q |
101 |
cttggacaaaggtgcagcgtcaaagctgtagatcctaaagctaagccagttaatctatgtgttgtgctcgtgtttattttggcaataatgagtttgttta |
200 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42063120 |
cttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttattttggcaataatgagtttgtgta |
42063021 |
T |
|
| Q |
201 |
atggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgcagcaataagaggataaagtgaagaaagagtgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42063020 |
atggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagaggataaagtgaagaaagagtgc |
42062921 |
T |
|
| Q |
301 |
aatgcgaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattaatgtgaagtaactcaccctccccctcatccttcgtattcatttc |
400 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
42062920 |
aaggcaaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattattgtgaagcaactcaccctccccctcatctttcgtattcatttc |
42062821 |
T |
|
| Q |
401 |
agttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42062820 |
agttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
42062752 |
T |
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