View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_high_1 (Length: 473)
Name: NF18028_high_1
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 457
Target Start/End: Complemental strand, 40198650 - 40198203
Alignment:
| Q |
10 |
caaaggctgtacattaaccacttgagagtcgaatctattggagctaggccatataaagtatgaaaccttaacattccataggcttaatgtataagaacaa |
109 |
Q |
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| T |
40198650 |
caaaagctgtgcattaaccacttgagaatcgaatatattggagctaggccatataaagtatgaaaccttaacattccataggcttaatgtatacgaacaa |
40198551 |
T |
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| Q |
110 |
acaccgcaaagtataaaccatataaaagcataccttgacttcattgatgtcaacattgacaatttgtaataggcggtcatcaatcatgtggtctacctaa |
209 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40198550 |
acacagcaaagtataaaccatctaaaagcataccttgacttcattgatgtcaacattgacaatttgtaataggcggtcatcaatcatgtggtctacctaa |
40198451 |
T |
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| Q |
210 |
gaagccatattaagtacagtcagcatagcaatatcaattgagaaataaaacttgaatagataatgattacctgtgagcgaagaagttccttgtatgtagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40198450 |
gaagccatattaagtacagtcagcatagcaatatcaattgagaaataaaagttcaatagataatgattacctgtgagcgaagaagttccttgtatgtagt |
40198351 |
T |
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| Q |
310 |
gatttctctcaaagcaatggtaaatttgttcattacaggtcctgggagtagtgaaaacaaaatatattaaaatgaagagaaaagataatgtttaattaaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40198350 |
gatttctctcaaagcaatggtaaatttgttcattacaggtcctgggagtagtgaaaacaaaatatattaaaatgaagagaaaggataatgtttaattaaa |
40198251 |
T |
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| Q |
410 |
cggattatatggcttacctcccaatgcaacgaaatgaggatcagtatg |
457 |
Q |
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| T |
40198250 |
cggattatatggcttacctcccaatgcaacgaaatgaggatcagtatg |
40198203 |
T |
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 45083984 - 45083905
Alignment:
| Q |
275 |
attacctgtgagcgaagaagttccttgtatgtagtgatttctctcaaagcaatggtaaatttgttcattacaggtcctgg |
354 |
Q |
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||||||||||| |||||||||||||||| |||| ||||||||||||||||||| | |||||| ||||||||||||||| |
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| T |
45083984 |
attacctgtgaacgaagaagttccttgtgtgtactgatttctctcaaagcaatagagaatttggccattacaggtcctgg |
45083905 |
T |
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