View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18028_high_12 (Length: 255)
Name: NF18028_high_12
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 36231772 - 36232004
Alignment:
| Q |
7 |
gaagcataggtaatgatgttgaaggtggaagagtagcaattgatacatcctctgaagaaggaagcatattagcttccatgagtttgtatttatgtatttc |
106 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36231772 |
gaagcattggtaatgatgttgaaggtggaagagtagcaattgatacatcctctgaagaaggaagcatattagcttccatgagtttgtatttatgtatttc |
36231871 |
T |
|
| Q |
107 |
ttcccttatagcattaagttcacctattaatgattgaacttgttgttgcaaagatgaaattgcacccatgcatccataaactggatctcttagtcttaca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36231872 |
ttcccttatagcattaagttcacctattaatgattgaacttgttgttgcaaagatgaaattgcacccatgcatccataaactggatctcttagtcttaca |
36231971 |
T |
|
| Q |
207 |
tttgcttcataaactaaactatttgctgcatct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36231972 |
tttgcttcataaactaaactatttgctgcatct |
36232004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 31868948 - 31869049
Alignment:
| Q |
138 |
gattgaacttgttgttgcaaagatgaaattgcacccatgcatccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcat |
237 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||| | |||||||||||||| |
|
|
| T |
31868948 |
gattggacttgttgttgtaatgatgatattgcacccatgcatccataaacaggatctcttaaccttaaattagcttcataaaccatactatttgctgcat |
31869047 |
T |
|
| Q |
238 |
ct |
239 |
Q |
| |
|
|| |
|
|
| T |
31869048 |
ct |
31869049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 35919729 - 35919670
Alignment:
| Q |
180 |
ccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcatct |
239 |
Q |
| |
|
|||||||||||||| || | |||| ||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
35919729 |
ccataaactggatccctcactcttgcatttgcttcatagactaaactgtttactgcatct |
35919670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 43200646 - 43200747
Alignment:
| Q |
138 |
gattgaacttgttgttgcaaagatgaaattgcacccatgcatccataaactggatctcttagtcttacatttgcttcataaactaaactatttgctgcat |
237 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||||| |
|
|
| T |
43200646 |
gattgaacctgttgttgcaatgcagaaattgcacccatgcatccataaactggatctcttagcctcacatttgcttcataaacaagactatttgctgcat |
43200745 |
T |
|
| Q |
238 |
ct |
239 |
Q |
| |
|
|| |
|
|
| T |
43200746 |
ct |
43200747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 26665914 - 26665865
Alignment:
| Q |
177 |
catccataaactggatctcttagtcttacatttgcttcataaactaaact |
226 |
Q |
| |
|
||||||||||| |||||||| | |||| ||||||||||| |||||||||| |
|
|
| T |
26665914 |
catccataaacaggatctctcactcttgcatttgcttcaaaaactaaact |
26665865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University