View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_high_2 (Length: 467)
Name: NF18028_high_2
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 113 - 452
Target Start/End: Original strand, 43709975 - 43710310
Alignment:
| Q |
113 |
ttgtggcatgcagaaaataaccgaagtaaattcctagaaatgaaagnnnnnnntgacataaattcaatagaactacataataaatgtacacatgcaagaa |
212 |
Q |
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| T |
43709975 |
ttgtggcatgcagaaaataaccgaagtaaattcctagaaatgaaagaaaaaaatgacataaattcaatagaactacataataaatgtacacatgcaagaa |
43710074 |
T |
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| Q |
213 |
atgaatttggaagcatagaaatgtgcttactctttagtaacagcgatgacattatcagcaagacgttgcatattctctctcgatcgatcaaattttgggt |
312 |
Q |
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| T |
43710075 |
atgaatttggaagcagagaaatgtgcttactctttagtaacagcgatgacattatcagcaagacgttgcatattctctctcgatcgatcaaattttgggt |
43710174 |
T |
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| Q |
313 |
tattctttctttctttctttcaaattacgaaaatgtgaaaattcagaatatactgaaattcgaatatttgnnnnnnnctgtgaaattagggacagacgaa |
412 |
Q |
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| T |
43710175 |
ta----ttctttctttctttcaaattacgaaaatgtgaaaattcagaatatactgaaattcgaatatttgtttttttctgtgaaattagggacagacgaa |
43710270 |
T |
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| Q |
413 |
gcgaatcgaaaccaacgaagaaaacgataaacacaattct |
452 |
Q |
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| T |
43710271 |
gcaaatcgaaaccaacgaagaaaacgataaacacaattct |
43710310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 43709853 - 43709951
Alignment:
| Q |
1 |
ttgagcaaatgtttggtatcacggttgctttagcagaatcacgatgagccaccatgataccaaatacgcactaaatagtgtttaaattggttggcaatt |
99 |
Q |
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| T |
43709853 |
ttgagcaaatgtttggtatcacggttgctttagcagaatcacgatgagccaccatgataccaaatacgcactaaatagtgtttaaattggttggaaatt |
43709951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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