View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18028_high_5 (Length: 385)

Name: NF18028_high_5
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18028_high_5
NF18028_high_5
[»] chr6 (1 HSPs)
chr6 (14-372)||(6060048-6060401)
[»] chr1 (5 HSPs)
chr1 (224-263)||(4691938-4691977)
chr1 (301-365)||(3288366-3288430)
chr1 (300-364)||(47074680-47074744)
chr1 (214-260)||(3288469-3288515)
chr1 (214-263)||(26354700-26354749)
[»] chr2 (1 HSPs)
chr2 (214-263)||(41317586-41317635)
[»] chr5 (1 HSPs)
chr5 (223-263)||(15302792-15302832)
[»] chr4 (3 HSPs)
chr4 (307-367)||(27599087-27599147)
chr4 (278-333)||(24536222-24536278)
chr4 (214-257)||(8433369-8433412)
[»] chr8 (3 HSPs)
chr8 (214-268)||(32381202-32381256)
chr8 (214-268)||(32435157-32435211)
chr8 (296-365)||(20098563-20098632)
[»] chr3 (3 HSPs)
chr3 (308-342)||(21496540-21496574)
chr3 (218-260)||(38000592-38000634)
chr3 (296-333)||(14195910-14195947)
[»] chr7 (1 HSPs)
chr7 (214-259)||(25157040-25157085)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 6060401 - 6060048
Alignment:
Q  14 agagaacaacttcaaaattaatggaaaaccgcatatcttaatgtgtcgtgcacaaaactttttaaagtaaaactgacggatgcaattcaaccatacttat 113  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  6060401 agagaacaacttcaaaattaatggaaaactgcatatcttaatgtgtcgtgcacaaaactttttaaagtaaaactgacagatgcaattcaaccatacatat 6060302  T
Q  114 tacgaaaataaaataaaagtgttgattgattaactaattttaacttctttttacattattttgacattcaatgctacgatgaatcctcctaataagcacc 213  Q
    || |     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  6060301 tatg-----aaaagaaaagtgttgattgattaactaattttaacttctttttacattattttgacattcaatgctaccatgaatcctcctaataagcact 6060207  T
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatctt-aaaaagaataannnnnnnnataccctagaatttgcataattaatttgacagaat 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||        |||||||||||||||||||||||||||||||||||    
T  6060206 ggcggaacc-ggggtggcaagggggagccttggccaccccatcttaaaaaaaaaaaaaaaaaattataccctagaatttgcataattaatttgacagaat 6060108  T
Q  313 tgtaaatgatactttaataaatccatttttcttgcctagtaaacttaactttgttccttt 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6060107 tgtaaatgatactttaataaatccatttttcttgcctagtaaacttaactttgatccttt 6060048  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 4691938 - 4691977
Alignment:
Q  224 ggggtggcaagggggagccttggccaccccatcttaaaaa 263  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4691938 ggggtggcaagggggagccttggccaccccatcttaaaaa 4691977  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 3288430 - 3288366
Alignment:
Q  301 atttgacagaattgtaaatgatactttaataaatccatttttcttgcctagtaaacttaactttg 365  Q
    ||||| |||||||||||||||||| |||||||| ||| |||||||| |||||| || ||||||||    
T  3288430 atttggcagaattgtaaatgataccttaataaacccacttttcttgtctagtacacataactttg 3288366  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 47074744 - 47074680
Alignment:
Q  300 aatttgacagaattgtaaatgatactttaataaatccatttttcttgcctagtaaacttaacttt 364  Q
    |||||| || ||||||||||||| |||||||||| ||| |||||||| ||| || ||||||||||    
T  47074744 aatttggcaaaattgtaaatgatgctttaataaacccacttttcttgtctaatacacttaacttt 47074680  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 3288515 - 3288469
Alignment:
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatcttaa 260  Q
    ||||||||||||| || ||||||||||||  ||||||||||||||||    
T  3288515 ggcggaaccggggttgacaagggggagccacggccaccccatcttaa 3288469  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 26354700 - 26354749
Alignment:
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatcttaaaaa 263  Q
    |||||||| || |||||||||||||||||   ||||||||||||||||||    
T  26354700 ggcggaactggaggtggcaagggggagccaccgccaccccatcttaaaaa 26354749  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 41317586 - 41317635
Alignment:
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatcttaaaaa 263  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  41317586 ggcggaaccaggggtggcatgggggagccatggccaccccatcttaaaaa 41317635  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 15302832 - 15302792
Alignment:
Q  223 gggggtggcaagggggagccttggccaccccatcttaaaaa 263  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  15302832 ggggatggcaagggggagccttggccaccccatcttaaaaa 15302792  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 27599087 - 27599147
Alignment:
Q  307 cagaattgtaaatgatactttaataaatccatttttcttgcctagtaaacttaactttgtt 367  Q
    |||||||||||||||||| |||||||| ||| |||| ||| |||||| |||||||||||||    
T  27599087 cagaattgtaaatgataccttaataaacccactttttttgtctagtacacttaactttgtt 27599147  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 24536278 - 24536222
Alignment:
Q  278 ataccctagaattt-gcataattaatttgacagaattgtaaatgatactttaataaa 333  Q
    |||||||||||||| ||| |||||||||| || ||||||||||||||| ||||||||    
T  24536278 ataccctagaatttagcagaattaatttggcaaaattgtaaatgataccttaataaa 24536222  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 8433412 - 8433369
Alignment:
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatct 257  Q
    |||||||||||||||||||||||||||||   ||||||||||||    
T  8433412 ggcggaaccgggggtggcaagggggagccaccgccaccccatct 8433369  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 32381202 - 32381256
Alignment:
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatcttaaaaagaata 268  Q
    |||||| ||||||||||||||||||||||   ||||||||||||| |||| ||||    
T  32381202 ggcggagccgggggtggcaagggggagccaccgccaccccatcttcaaaaaaata 32381256  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 32435157 - 32435211
Alignment:
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatcttaaaaagaata 268  Q
    |||||| ||||||||||||||||||||||   ||||||||||||| |||| ||||    
T  32435157 ggcggagccgggggtggcaagggggagccaccgccaccccatcttcaaaaaaata 32435211  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 20098563 - 20098632
Alignment:
Q  296 aattaatttgacagaattgtaaatgatactttaataaatccatttttcttgcctagtaaacttaactttg 365  Q
    |||||||||  || |||||||||| |||| |||||||| ||| ||||||||  ||||| |||||||||||    
T  20098563 aattaatttagcataattgtaaataataccttaataaacccacttttcttgtttagtacacttaactttg 20098632  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 21496540 - 21496574
Alignment:
Q  308 agaattgtaaatgatactttaataaatccattttt 342  Q
    |||||||||||||||||||||||||| ||||||||    
T  21496540 agaattgtaaatgatactttaataaacccattttt 21496574  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 38000634 - 38000592
Alignment:
Q  218 gaaccgggggtggcaagggggagccttggccaccccatcttaa 260  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  38000634 gaaccaggggtggcaagggggagccacggccaccccatcttaa 38000592  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 14195947 - 14195910
Alignment:
Q  296 aattaatttgacagaattgtaaatgatactttaataaa 333  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  14195947 aattaatttggcagaattgtaaatgataccttaataaa 14195910  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 25157085 - 25157040
Alignment:
Q  214 ggcggaaccgggggtggcaagggggagccttggccaccccatctta 259  Q
    |||||| | |||||||||||| | ||||||||||||||||||||||    
T  25157085 ggcggagctgggggtggcaagagcgagccttggccaccccatctta 25157040  T

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