View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18028_high_6 (Length: 347)
Name: NF18028_high_6
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_high_6 |
 | |
|
| [»] chr4 (12 HSPs) |
| |
|
| [»] scaffold0516 (1 HSPs) |
| | |
|
| [»] scaffold0182 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 2500574 - 2500920
Alignment:
| Q |
1 |
atataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2500574 |
atataagcaacatatatgtaagcttagaaaaaaatgagtagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaat |
2500673 |
T |
|
| Q |
101 |
gtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2500674 |
gtaaccgcacaatattaataaaatggattataatgcattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaa |
2500773 |
T |
|
| Q |
201 |
agatagatagtaaggaatggttagtagggaatcaagaacaaaagagagccacatgacataagtatagcttaaaatacatgtagatagagataatgagtga |
300 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2500774 |
agataaatagtaaggaatgattagtagggaatcaagaacaaaagagagccacatggcataagtatagcttaaaatacatgtagatagagataatgagtga |
2500873 |
T |
|
| Q |
301 |
gtgaatggtggtcatagttaagaaacatgagttatggaagaaaaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2500874 |
gtgaatggtggtcatagttaagaaacatgagttatggaataaaaaat |
2500920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 34737731 - 34737993
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgt |
102 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34737731 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaaacttgtgtgtgtaagaggattgatcaagaatatgaataattttaaaatgt |
34737830 |
T |
|
| Q |
103 |
aaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaag |
202 |
Q |
| |
|
|||| | || | ||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| || |||||||||| ||||| ||||||||| |
|
|
| T |
34737831 |
aacccctcattgttaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtagatggagtgtttttgcaactgatggaaaatgaaag |
34737930 |
T |
|
| Q |
203 |
atagatagtaaggaatggttagtagggaatcaagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||||| ||| ||||||| ||||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
34737931 |
atagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggcataagtat |
34737993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 53830434 - 53830703
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
53830434 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
53830533 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | || |||||||||| ||||| |||||| |
|
|
| T |
53830534 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatagagtgtttttgcaaccgatggaaaatga |
53830633 |
T |
|
| Q |
200 |
a----agatagatagtaaggaatggttagtagggaatcaagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
| ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
53830634 |
aagatagatagatagtaaggaacggctagtaaagaatcaagaacaaaagatagccacatggcataagtat |
53830703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 35 - 265
Target Start/End: Complemental strand, 21803074 - 21802844
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| ||||||| || |||||||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
21803074 |
tgaggagctttatagtaaacttgtgtgtgtaagattattgattaagaatatgaacaattttaaaacgtaacccctcaatattaataaaatggattataat |
21802975 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatca |
234 |
Q |
| |
|
| |||||||||| |||||||| ||||||||||||||| | |||||||||| ||| |||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
21802974 |
gcattcattgtgtaacttgcaagaagtgaagtaaatgaaatgtttttgcaactgataggaaatgaaagatagatagtaatgaatggctagtaaagaatca |
21802875 |
T |
|
| Q |
235 |
agaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||||||||||||||||| || ||||||||| |
|
|
| T |
21802874 |
agaacaaaagagagccacttggcataagtat |
21802844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 35 - 265
Target Start/End: Complemental strand, 5430891 - 5430657
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcac---aatattaataaaatggattat |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| | | | ||||||||||||||||||| |
|
|
| T |
5430891 |
tgaggagttttatagtaaacttgtgtgtgtaagatgattgactaagaatatgaataattttaaaatgtaacccctcactattattaataaaatggattat |
5430792 |
T |
|
| Q |
132 |
aatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaaga-tagatagtaaggaatggttagtaggga |
230 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||||||| | ||||| ||| |||||||||||||||| ||||||||||||||||| ||||| || |
|
|
| T |
5430791 |
aatacattcattgtgtaacttccatgaagtgaagtaaatggagagtttttccaattgatgggaaatgaaagattagatagtaaggaatggctagtaaaga |
5430692 |
T |
|
| Q |
231 |
atcaagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5430691 |
atcaagaacaaaagagagccacatggcataagtat |
5430657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 2504930 - 2505143
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
2504930 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
2505029 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
2505030 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
2505129 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2505130 |
aagatagatagtaa |
2505143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 35 - 265
Target Start/End: Original strand, 21632733 - 21632964
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||| ||||||| || |||||||||| ||||| | ||||||||||||||||||| ||||| |
|
|
| T |
21632733 |
tgaggagctttatagtaaacttgtgtgtgtaagaagattgattaagaatatgaacaattttaaaacataacccctcaatattaataaaatggatcataat |
21632832 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatg--gtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaat |
232 |
Q |
| |
|
| |||||| ||| |||||||| ||||||||||||||| ||| |||||||||| ||| | ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
21632833 |
gcattcatcgtgtaacttgcaagaagtgaagtaaatgaaatgt-tttttgcaactgatagaaaatgaaagatagatagtaaggaatggctagtaaagaat |
21632931 |
T |
|
| Q |
233 |
caagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||| |
|
|
| T |
21632932 |
caagaacaaaagagcgccacttggcataagtat |
21632964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 46092516 - 46092306
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
46092516 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
46092417 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||| ||| ||||| |||||| |
|
|
| T |
46092416 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggcaagtttttgtaaccgatggaaaatga |
46092317 |
T |
|
| Q |
200 |
aagatagatag |
210 |
Q |
| |
|
||||||||||| |
|
|
| T |
46092316 |
aagatagatag |
46092306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 46135041 - 46134831
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
46135041 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
46134942 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||| ||| ||||| |||||| |
|
|
| T |
46134941 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggcaagtttttgtaaccgatggaaaatga |
46134842 |
T |
|
| Q |
200 |
aagatagatag |
210 |
Q |
| |
|
||||||||||| |
|
|
| T |
46134841 |
aagatagatag |
46134831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 20036453 - 20036251
Alignment:
| Q |
43 |
tttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcat |
142 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||||| || |||||||||||||||| ||||||||| |||||| |
|
|
| T |
20036453 |
tttatagtaaacttgtgagtgtaagaggattgattaagaatatgattaattttaaaatgtaactgctcaatattaataaaatgaattataatgcattcat |
20036354 |
T |
|
| Q |
143 |
tgtgcaacttgcatgaagtgaagtaaatg--gtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatcaagaaca |
240 |
Q |
| |
|
| |||||||||||||||||||||||| || |||| ||||| || | |||||||||||||||||||||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
20036353 |
tatgcaacttgcatgaagtgaagtaactgaagtgt-tttttacatctgatgggaaatgaaagatagatagtaatgaatgactagtaaagaat-aagaaca |
20036256 |
T |
|
| Q |
241 |
aaaga |
245 |
Q |
| |
|
||||| |
|
|
| T |
20036255 |
aaaga |
20036251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 43943520 - 43943476
Alignment:
| Q |
127 |
attataatgtattcattgtgcaacttgcatgaagtgaagtaaatg |
171 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43943520 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatg |
43943476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 43943600 - 43943563
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggat |
72 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
43943600 |
tgaggagctttgtagtaaacttgtgtgtgtaagaggat |
43943563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0516 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0516
Description:
Target: scaffold0516; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 35 - 265
Target Start/End: Complemental strand, 3425 - 3195
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3425 |
tgaggagctttatagtaaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaaccgcttaatattaataaaatggattataat |
3326 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatca |
234 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||||| |||||| ||||| |||||| |
|
|
| T |
3325 |
tcaatcattgtgcaacttgcatgaagtgaagtaaatgaagtgtttttgcaactgatgggaaatgaaagataaatagtaaagaatggctagtaaagaatca |
3226 |
T |
|
| Q |
235 |
agaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3225 |
agaacaaaagagagccacatgacataagtat |
3195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 47233749 - 47234016
Alignment:
| Q |
1 |
atataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaa |
97 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
47233749 |
atataagcaacatatatataagcttataaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaa |
47233848 |
T |
|
| Q |
98 |
aatgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaat |
197 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||||||||| ||||| |||| |
|
|
| T |
47233849 |
aatgtaaccccttaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgaagtgtttttgcaactgatggaaaat |
47233948 |
T |
|
| Q |
198 |
gaaagatagatagtaaggaatggttagtagggaatcaagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47233949 |
gaaagatagatagtaaggaatgactagtaaagaatcaagaacaaaagatagccacatgacataagtat |
47234016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 44393846 - 44393614
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||| | || |||||||||||||||||||||| |
|
|
| T |
44393846 |
tgaggagctttatagtaaacttgtgtgtgtaagatgattgactaagaatatgaataattttaaaatgaaacccctcactattaataaaatggattataat |
44393747 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaaga-tagatagtaaggaatggttagtagggaatc |
233 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| | | ||||| ||| |||||||||||||||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
44393746 |
acattcattgtgtaacttccatgaagtgaagtaaatagagagtttttccaattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatc |
44393647 |
T |
|
| Q |
234 |
aagaacaaaagagagccacatgacataagtata |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
44393646 |
aagaacaaaagagagccacatgacataagtata |
44393614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 5767993 - 5768206
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5767993 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
5768092 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
5768093 |
tgtaacccctcaatattaataaaattgattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
5768192 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5768193 |
aagatagatagtaa |
5768206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 25419504 - 25419717
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
25419504 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
25419603 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
25419604 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
25419703 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25419704 |
aagatagatagtaa |
25419717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 39066849 - 39067012
Alignment:
| Q |
50 |
taaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaa |
149 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
39066849 |
taaacttgtatgtgtaagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaa |
39066948 |
T |
|
| Q |
150 |
cttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaa |
213 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
39066949 |
cttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatgaaagatagatagtaa |
39067012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 47932975 - 47933019
Alignment:
| Q |
127 |
attataatgtattcattgtgcaacttgcatgaagtgaagtaaatg |
171 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47932975 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatg |
47933019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 47932924 - 47932961
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggat |
72 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
47932924 |
tgaggagctttgtagtaaacttgtgtgtgtaagaggat |
47932961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 266
Target Start/End: Original strand, 37301952 - 37302183
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
37301952 |
tgaggagttttatagtaaacttgtgtgtgtaagtggattgattaagaatatgaataattttaaaatgtaaccctccattattaataaaatggattataat |
37302051 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatca |
234 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| ||| ||||||| ||||| |||||| |
|
|
| T |
37302052 |
gcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgcaaatgatgggaaatgaaagatagattgtacggaatggctagtaaagaatca |
37302151 |
T |
|
| Q |
235 |
agaacaaaagagagccacatgacataagtata |
266 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |
|
|
| T |
37302152 |
agaacaaaagagatccacatggcataagtata |
37302183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 265
Target Start/End: Original strand, 21605046 - 21605261
Alignment:
| Q |
50 |
taaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
21605046 |
taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatttaacccctcaatattaataaaatggattataatgcattcattgtgtaa |
21605145 |
T |
|
| Q |
150 |
cttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatcaagaacaaaagagagc |
249 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | |||| |||||||||||||||||||||||||| || || ||||||||||||||||| ||| |
|
|
| T |
21605146 |
cttgcatgaagtgaagtaaatgaagtgtttttgcagccaatggaaaatgaaagatagatagtaaggaatgactaataaagaatcaagaacaaaagatagc |
21605245 |
T |
|
| Q |
250 |
cacatgacataagtat |
265 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21605246 |
cacatgacataagtat |
21605261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 36991256 - 36991043
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
36991256 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
36991157 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
36991156 |
tgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
36991057 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36991056 |
aagatagatagtaa |
36991043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 35 - 265
Target Start/End: Original strand, 8150455 - 8150685
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||| |
|
|
| T |
8150455 |
tgaggagctttatagtaaacttgtgtgtgtaagaggactgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaattgattataat |
8150554 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatca |
234 |
Q |
| |
|
| |||||||||| |||| |||| ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
8150555 |
gcattcattgtgtaactcgcataaagtgaagtaaatggagtgtttttgcaactgatgggaaatgaaagatagatagtaagaaatggctagtaaagaatca |
8150654 |
T |
|
| Q |
235 |
agaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| |
|
|
| T |
8150655 |
agaacaaaagtgagtcacatggcataagtat |
8150685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 35 - 264
Target Start/End: Complemental strand, 10186532 - 10186303
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
10186532 |
tgaggagctttatagtaaacttgtgtgtgtaagaggattgattaagaatatgaacaattttaaaatgtaacccctcaatattaataaaatggattataat |
10186433 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatca |
234 |
Q |
| |
|
| |||||||||| |||||||| ||||||| ||||||| | |||||||||| ||| |||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
10186432 |
gcattcattgtgtaacttgcaagaagtgaggtaaatgaaatgtttttgcaactgataggaaatgaaagatagatagtaaggaatgactagtaaagaatca |
10186333 |
T |
|
| Q |
235 |
agaacaaaagagagccacatgacataagta |
264 |
Q |
| |
|
|||||||||||||| ||| || |||||||| |
|
|
| T |
10186332 |
agaacaaaagagagtcacttggcataagta |
10186303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 35 - 266
Target Start/End: Complemental strand, 20172136 - 20171904
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||| | || |||||||||||||||||||||| |
|
|
| T |
20172136 |
tgaggagctttatagtaaacttgtgtgtgtaagatgattgactaagaatatgaataattttaaaatgaaacccctcactattaataaaatggattataat |
20172037 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaaga-tagatagtaaggaatggttagtagggaatc |
233 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| | | ||||| ||| |||||||||||||||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
20172036 |
acattcattgtgtaacttccatgaagtgaagtaaatagagagtttttccaattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatc |
20171937 |
T |
|
| Q |
234 |
aagaacaaaagagagccacatgacataagtata |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
20171936 |
aagaacaaaagagagccacatgacataagtata |
20171904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 4138488 - 4138265
Alignment:
| Q |
49 |
gtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcattgtgca |
148 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| || |||||||||| |||||| | ||||||||||||||| |||||||||| |||||||||| | |
|
|
| T |
4138488 |
gtaaacttgtgtgtgtaagagtcttgattaagaatatgaacaattttaaaacgtaacccctcaatattaataaaatagattataatgcattcattgtgta |
4138389 |
T |
|
| Q |
149 |
acttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaa-------agatagatagtaaggaatggttagtagggaatcaagaacaa |
241 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||||||| ||||||||| |||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
4138388 |
acttgcaagaagtgaagtaaatgaaatgtttttgcaacggataggaaatgaaagatgaaagatagatagtagagaatggctagtaaagaatcaagaacaa |
4138289 |
T |
|
| Q |
242 |
aagagagccacatgacataagtat |
265 |
Q |
| |
|
||||||||||| || ||||||||| |
|
|
| T |
4138288 |
aagagagccacttggcataagtat |
4138265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 138 - 265
Target Start/End: Original strand, 11428184 - 11428312
Alignment:
| Q |
138 |
ttcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagat-agatagtaaggaatggttagtagggaatcaag |
236 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
11428184 |
ttcattgtgtaacttccatgaagtgaagtaaatggatagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaag |
11428283 |
T |
|
| Q |
237 |
aacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
||||||||||||||||| | ||||||||| |
|
|
| T |
11428284 |
aacaaaagagagccacaaggcataagtat |
11428312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 918949 - 919018
Alignment:
| Q |
65 |
aagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
918949 |
aagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataat |
919018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 11428106 - 11428177
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaacc |
106 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11428106 |
tgaggagctttatcgtaaacttctgtgtgtaagatgattgactaagaatatgaataattttaaaatgtaacc |
11428177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 48266477 - 48266213
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
48266477 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
48266378 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| | |||||||||| ||||| |||||| |
|
|
| T |
48266377 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagt-aagtaaatggagagtttttgcaactgatggaaaatga |
48266279 |
T |
|
| Q |
200 |
aagatagatagtaaggaatggttagtagggaatcaagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
48266278 |
aagatagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatgacataagtat |
48266213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 50 - 265
Target Start/End: Complemental strand, 35870506 - 35870291
Alignment:
| Q |
50 |
taaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
35870506 |
taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaacctctcaatattaataaaatggattataatgcattcattgtgtaa |
35870407 |
T |
|
| Q |
150 |
cttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatcaagaacaaaagagagc |
249 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||| ||| |
|
|
| T |
35870406 |
cttgcatgaagtgaagtaaatggagagttttcgcaactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaagaaaagatagc |
35870307 |
T |
|
| Q |
250 |
cacatgacataagtat |
265 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
35870306 |
cacatggcataagtat |
35870291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 52349939 - 52349726
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
52349939 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatataaataattttaaaa |
52349840 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
52349839 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
52349740 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
52349739 |
aagatagatagtaa |
52349726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 78 - 265
Target Start/End: Complemental strand, 26215420 - 26215232
Alignment:
| Q |
78 |
aagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtat |
177 |
Q |
| |
|
||||||| |||||||||||||||||||| | | ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| | | |
|
|
| T |
26215420 |
aagaatatgaataattttaaaatgtaacccctcgctattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaatggagagt |
26215321 |
T |
|
| Q |
178 |
ttttgcaacggatgggaaatgaaaga-tagatagtaaggaatggttagtagggaatcaagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||| ||| ||||| |||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26215320 |
ttttccaattgatggaaaatgaaagattagatagtaaggaatggctagcaaagaatcaagaacaaaagagagccacatggcataagtat |
26215232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 5884423 - 5884467
Alignment:
| Q |
127 |
attataatgtattcattgtgcaacttgcatgaagtgaagtaaatg |
171 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5884423 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatg |
5884467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 26215492 - 26215432
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataatttt |
95 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
26215492 |
tgaggagctttatagtaaacttgtgtgtgtaagatgattgactaagaatatgaataatttt |
26215432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 54945777 - 54945821
Alignment:
| Q |
127 |
attataatgtattcattgtgcaacttgcatgaagtgaagtaaatg |
171 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
54945777 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatg |
54945821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 54945726 - 54945763
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggat |
72 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
54945726 |
tgaggagctttgtagtaaacttgtgtgtgtaagaggat |
54945763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 50 - 265
Target Start/End: Original strand, 41646687 - 41646899
Alignment:
| Q |
50 |
taaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||| || |
|
|
| T |
41646687 |
taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattaaaatacattcattgtgtaa |
41646786 |
T |
|
| Q |
150 |
cttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatcaagaacaaaagagagc |
249 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| ||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
41646787 |
cttgcatgaaatgaagtaaatggagtgtttttgcaaccgatggaaaatgaaagata---agtaaggaatggctagtaaagaatcaagaacaaaagatagc |
41646883 |
T |
|
| Q |
250 |
cacatgacataagtat |
265 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
41646884 |
cacatggcataagtat |
41646899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 7574020 - 7574233
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7574020 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
7574119 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
7574120 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
7574219 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7574220 |
aagatagatagtaa |
7574233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 16668615 - 16668828
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16668615 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgatcaagaatatgaataattttaaaa |
16668714 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
16668715 |
tgtaacccctcaatattaataaaatggattataatgcattcattatgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
16668814 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16668815 |
aagatagatagtaa |
16668828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 43564304 - 43564238
Alignment:
| Q |
68 |
aggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
43564304 |
aggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataat |
43564238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 29455517 - 29455448
Alignment:
| Q |
65 |
aagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
29455517 |
aagaggattaattaagaatatgaataattttaaaatgtaacccctcgatattaataaaatggattataat |
29455448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 22912460 - 22912722
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgt |
102 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| || |||||||| | |||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
22912460 |
ataagcaacatatatataagcttagaaaaaaatgaggagcttaatagtaaattcgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgt |
22912559 |
T |
|
| Q |
103 |
aaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacg-gatgggaaatgaaa |
201 |
Q |
| |
|
||| | || |||||||||||||| |||||||| ||||||| || ||| |||| |||||||||||||||| || ||| |||||| |||||||||||||| |
|
|
| T |
22912560 |
aactcctca-tattaataaaatggtttataatgcattcattttgtaacatgcaagaagtgaagtaaatggagtgtttctgcaacctgatgggaaatgaaa |
22912658 |
T |
|
| Q |
202 |
gatagatagtaaggaatggttagtagggaatcaagaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
|||| ||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22912659 |
gataaataataaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagtat |
22912722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 13786442 - 13786229
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
13786442 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
13786343 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
13786342 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
13786243 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13786242 |
aagatagatagtaa |
13786229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 265
Target Start/End: Original strand, 23725991 - 23726218
Alignment:
| Q |
35 |
tgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataat |
134 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23725991 |
tgaggagctttatagtaaacttgtgtgc--aagaggattgattaagaatatgaataattt-aaaatgtaaccgtttaatattaataaaatggattataat |
23726087 |
T |
|
| Q |
135 |
gtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaaggaatggttagtagggaatca |
234 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||||||||| |||| |||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
23726088 |
tcattcattgtgcaacttgcatgaaatgaagtaaatgaagtgtttttgcaacagatgaaaaatgaaagatagatagtaaagaatgaccagtaaagaatca |
23726187 |
T |
|
| Q |
235 |
agaacaaaagagagccacatgacataagtat |
265 |
Q |
| |
|
||||||||||||||||| || |||||||||| |
|
|
| T |
23726188 |
agaacaaaagagagccatataacataagtat |
23726218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 25807751 - 25807914
Alignment:
| Q |
50 |
taaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaa |
149 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
25807751 |
taaacttgtgtgtgtaagaggattgattaagaatatgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaa |
25807850 |
T |
|
| Q |
150 |
cttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatgaaagatagatagtaa |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||||| |
|
|
| T |
25807851 |
cttgcatgaagtgaagtaaatggaaagtttttgtaattgatggaaaatgaaagatagatagtaa |
25807914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 13433382 - 13433595
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaa---acttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaa |
99 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
13433382 |
ataagcaacatatatataagcttagaaaaaaatgaggagctttatagtaataaatttgtgtgtgtaagaggattgattaagaatatgaataattttaaaa |
13433481 |
T |
|
| Q |
100 |
tgtaaccgcacaatattaataaaatggattataatgtattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaacggatgggaaatga |
199 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||| ||| ||||| |||||| |
|
|
| T |
13433482 |
tgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaactgatggaaaatga |
13433581 |
T |
|
| Q |
200 |
aagatagatagtaa |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13433582 |
aagatagatagtaa |
13433595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 16857290 - 16857246
Alignment:
| Q |
127 |
attataatgtattcattgtgcaacttgcatgaagtgaagtaaatg |
171 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16857290 |
attataatgcattcattgtacaacttgcatgaagtgaagtaaatg |
16857246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 16712043 - 16712144
Alignment:
| Q |
3 |
ataagcaacatatatgtaagcttagnnnnnnntgaggagatttatagtaaacttgtgtgtgtaagaggattgatcaagaatacaaataattttaaaatgt |
102 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||| ||||| || ||| |||||||||||| ||||||| ||||||| |||||||||||||||| |
|
|
| T |
16712043 |
ataagcaacatatatatgagcttagaaaaaaatgaggagttttatggtgaac--gtgtgtgtaagatgattgattaagaatatgaataattttaaaatgt |
16712140 |
T |
|
| Q |
103 |
aacc |
106 |
Q |
| |
|
|||| |
|
|
| T |
16712141 |
aacc |
16712144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 26615320 - 26615380
Alignment:
| Q |
127 |
attataatgtattcattgtgcaac--ttgcatgaagtgaagtaaatggtgtatttttgcaa |
185 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
26615320 |
attataatgcattcattgtacaacaattgcatgaagtgaagtaaatgaagtgtttttgcaa |
26615380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 26721248 - 26721308
Alignment:
| Q |
127 |
attataatgtattcattgtgcaac--ttgcatgaagtgaagtaaatggtgtatttttgcaa |
185 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
26721248 |
attataatgcattcattgtacaacaattgcatgaagtgaagtaaatgaagtgtttttgcaa |
26721308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 10171 - 10215
Alignment:
| Q |
127 |
attataatgtattcattgtgcaacttgcatgaagtgaagtaaatg |
171 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10171 |
attataatgcattcattgcacaacttgcatgaagtgaagtaaatg |
10215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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