View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_1 (Length: 575)
Name: NF18028_low_1
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 39934648 - 39935207
Alignment:
| Q |
1 |
ttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934648 |
ttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaa |
39934747 |
T |
|
| Q |
101 |
gagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttccggtaatcttatgccaacatggcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39934748 |
gagcagagacaaccatgccaagaacagtcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaa |
39934847 |
T |
|
| Q |
201 |
gagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39934848 |
gagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaaagaccga |
39934947 |
T |
|
| Q |
301 |
tccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaagaccaaaaccaattgatattaataatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934948 |
tccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaagaccaaaaccaattgatattaataatat |
39935047 |
T |
|
| Q |
401 |
gcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatggatgaggctttaaagaattgattattgct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39935048 |
gcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatggatgaggctttaaagaattgattattgct |
39935147 |
T |
|
| Q |
501 |
gtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaattaaaagagaattgt |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39935148 |
gtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaattaaaagagaattgt |
39935207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 39695465 - 39695091
Alignment:
| Q |
1 |
ttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
39695465 |
ttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacattat--gcacatgtactaatttgagtctctttgattcaacaa |
39695368 |
T |
|
| Q |
101 |
gagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttcc-ggtaatcttatgccaacatggca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| ||||| ||||||||||| ||| | |
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|
| T |
39695367 |
gagcagagacaaccatgccaagaacagtcaacacatgtcctgctcctattcgttggagcggcataggc-attttcctggtaaccttatgccaacctggta |
39695269 |
T |
|
| Q |
200 |
agagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccg |
299 |
Q |
| |
|
| ||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| || || |
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| T |
39695268 |
atagcactctgtcaagaaatgtgaggaaaatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaatgaacg |
39695169 |
T |
|
| Q |
300 |
atccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaagacca |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
39695168 |
atccatgactaaagcttgaagtacaaccaagcaactttggattgctattggagttgctaagaatatacttgaagacca |
39695091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 39704374 - 39704008
Alignment:
| Q |
1 |
ttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||| | |||||||| |||||||||||||||| |
|
|
| T |
39704374 |
ttctccaataccaaccaacactaattgtggaaacaaccataacacagacatttccacat-----gcacatgtaccaatttgagcctctttgattcaacaa |
39704280 |
T |
|
| Q |
101 |
gagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttccggtaatcttatgccaacatggcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||||| || || |||||| | | |||||| ||||||||||||||||||||||| |
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|
| T |
39704279 |
gagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaa |
39704180 |
T |
|
| Q |
201 |
gagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccga |
300 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||| || |||||||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||| || ||| |
|
|
| T |
39704179 |
tagcactctgtcaagaaaggtgaggaaaatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaatgagcga |
39704080 |
T |
|
| Q |
301 |
tccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaa |
372 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
39704079 |
tccatggctaaagcttgaagtaccgtcacactactttggattgctattggagttgctaagaatatacttgaa |
39704008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 39929001 - 39929368
Alignment:
| Q |
1 |
ttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||||| | |||| ||||||||||||||||| |||||||||| |
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|
| T |
39929001 |
ttctccgataccaaccaacactaattgtggaaacaaccataatacagacattgaaacatgtt-----catgcgctaatttgagtctcttcgattcaacaa |
39929095 |
T |
|
| Q |
101 |
gagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataagtgattttccggtaatcttatgccaacatggcaa |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||| ||| |||| | |||||| || || | ||||||| ||||| ||||||||||| |||||| |
|
|
| T |
39929096 |
gagcagagaccaccatgccaagaacattgaacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaa |
39929195 |
T |
|
| Q |
201 |
gagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagacaataacagcaacagaactagctgggattttaaaatggggtcctaaagaccga |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
39929196 |
tagcaccctgtcaagaaaagtgaggaaaatgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatggtatcctaaagaacga |
39929295 |
T |
|
| Q |
301 |
tccatgactaaagcttgaagtacaaccaagctactttggattgctattggagttgataggaatatacttgaag |
373 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||| ||| |||||||| |||||||||||| |||||||| |
|
|
| T |
39929296 |
tccatgactaaagcttgaagtataatgaagtccatttgcattactattggaattgataggaatagacttgaag |
39929368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 374 - 555
Target Start/End: Original strand, 39930479 - 39930660
Alignment:
| Q |
374 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatgga |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| | |||||| |
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|
| T |
39930479 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtagtagatgaatctttgctgcatgga |
39930578 |
T |
|
| Q |
474 |
tgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaattaaaagaga |
555 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||| || | |||||||||||||| |||||||| | ||| |||||||||| |
|
|
| T |
39930579 |
tgaggctttaatgaattgattgtttctgtcaaaaataatagaattgtgccctgcaagtgcaaagttgaaagtttaaaagaga |
39930660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 374 - 555
Target Start/End: Complemental strand, 39692847 - 39692666
Alignment:
| Q |
374 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatgga |
473 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
39692847 |
accaaaaccaattgatattaacactatgcttatgtataaaactgtatattggattcctgttggtggtttgcatgtgattgatgaatcattgctacatgga |
39692748 |
T |
|
| Q |
474 |
tgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgcatgtgcaaaggtaaaaaattaaaagaga |
555 |
Q |
| |
|
|||||||||| ||||| || |||| ||||| || || | |||||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
39692747 |
tgaggctttagtgaattaatagttgccgtcaagaataatagaattgtgccctgcaagtgcaaaggtgaaagtttaaaagaga |
39692666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 374 - 528
Target Start/End: Complemental strand, 39702820 - 39702666
Alignment:
| Q |
374 |
accaaaaccaattgatattaataatatgcttatgtataaaactgtgtattggattcctgttggtggtttgcatgtgatggatgaatcattgatacatgga |
473 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |
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|
| T |
39702820 |
accaaaaccaattgatattaggactatgcttatgtataaaactgtatattggattcctgttggtggtatgcatgtgatggatgaatcattgctgcatgga |
39702721 |
T |
|
| Q |
474 |
tgaggctttaaagaattgattattgctgtcaaaaacaaaataattgtgccctgca |
528 |
Q |
| |
|
||||||||||| ||||||||| ||||||| || |||| |||||||||||||| |
|
|
| T |
39702720 |
tgaggctttaatgaattgattgttgctgttaaggttaaaagaattgtgccctgca |
39702666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 67 - 325
Target Start/End: Original strand, 38061739 - 38062001
Alignment:
| Q |
67 |
acatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcatattcgctggagcggcataa |
166 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| ||||||||||| || |||| |||||||||| ||| ||| |||||| |||||||||||| |
|
|
| T |
38061739 |
acatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaatggtcaacacatagcctactcctattcgttggagcggcatag |
38061838 |
T |
|
| Q |
167 |
g-tgattttccggtaatcttatgccaacatggcaagagcaccctgtcaagaaaagtgagaaaaatgggtgctgatattaagac---aataacagcaacag |
262 |
Q |
| |
|
| | |||| |||| ||| ||| ||||| |||||| | ||| ||||||||||| ||||| ||||| | || ||||||||| || |||||||| ||||| |
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|
| T |
38061839 |
gcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgaggaaaatagatgttgatattaacactataataacagaaacag |
38061938 |
T |
|
| Q |
263 |
aactagctgggattttaaaatggggtcctaaagaccgatccatgactaaagcttgaagtacaa |
325 |
Q |
| |
|
||| |||||||||||||||||| | ||||| ||| |||||||||| |||| |||||||||||| |
|
|
| T |
38061939 |
aaccagctgggattttaaaatgagatcctacagaacgatccatgattaaatcttgaagtacaa |
38062001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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