View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_10 (Length: 318)
Name: NF18028_low_10
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 12197719 - 12198028
Alignment:
| Q |
1 |
aaagagagtcttgcaatctttctt---cttggcttctttatgcgcattcctttgaatttatgtgggatttgcatgaagtgcttcaactccattgttgaca |
97 |
Q |
| |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
12197719 |
aaagagagtcttgaaatctttcttgttcttggcttctttatgcgcattcctttgaatttatgtgggatttgcaggaagtgcttcaacttcattgttgaca |
12197818 |
T |
|
| Q |
98 |
atctcaagaacatcttgaaacccaaagatcaccttcatttgtttcacccatcttccccaattcttcccatcaagaactggtaaatgtgcagagatgtttc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12197819 |
atctcaagaacatcttgaaacccaaagatcaccttcatctgtttcacccatctttgccaattcttcccatcaagaactggtaaatgtgcagagatgtttc |
12197918 |
T |
|
| Q |
198 |
cattggaattcatggttaactctcttcttcttggatcaaaaaatgattatgctctggataccaatttgttggtgaacaaattgatctagggtttatgtgt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12197919 |
cattggaattcatggttaactctcttcttcttggatcaaaaaatgattatgctctggataccaatttgttggtgaacaaattgatctagggtttatgtgt |
12198018 |
T |
|
| Q |
298 |
tttgtgtgat |
307 |
Q |
| |
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|||||||||| |
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| T |
12198019 |
tttgtgtgat |
12198028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 20832897 - 20832853
Alignment:
| Q |
263 |
ttgttggtgaacaaattgatctagggtttatgtgttttgtgtgat |
307 |
Q |
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|
| T |
20832897 |
ttgttggtgaacaaattgatctagggtttatgtgatttgtgtgat |
20832853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 284
Target Start/End: Complemental strand, 12832505 - 12832226
Alignment:
| Q |
2 |
aagagagtcttgcaatctttcttcttggcttctttatgcgcattcctttgaatttatgtgggatttgcatgaagtgcttcaactccattgttgacaatct |
101 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||| || |||| || ||||||||||||| || | ||||||||||||||| | ||| | |
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| T |
12832505 |
aagagagccttgcaatctttcttcttggcttctctatgcgcatttctctgaacttctgtgggatttgcag--agaggttcaactccattgttaataattt |
12832408 |
T |
|
| Q |
102 |
caagaacatcttgaaacccaaagatcaccttcatttgtttcacccatcttccccaattcttcccatcaagaactggtaaatgtgcagagatgtttccatt |
201 |
Q |
| |
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|||| || |||| |||||||||||||| |||||||||||||||||||||| ||| || |||||||||||||| |||| ||||||| |||| || |||| |
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| T |
12832407 |
caagcacttcttaaaacccaaagatcatcttcatttgtttcacccatctttcccggtttttcccatcaagaacgggtagatgtgcatagatattatcatt |
12832308 |
T |
|
| Q |
202 |
ggaattcatggttaa--ctctcttcttcttggatcaaaaaatgattatgctctggataccaatttgttggtgaacaaattgatct |
284 |
Q |
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| T |
12832307 |
aacattcatggttaatcatctcttc-tcttggatc--attttgaccaagctctagataccaatttgttggtgaacaaattgatct |
12832226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 31540306 - 31540263
Alignment:
| Q |
263 |
ttgttggtgaacaaattgatctagggtttatgtgttttgtgtga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31540306 |
ttgttggtgaacaaattgatctagggtttatgtgttttgtgtga |
31540263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33699422 - 33699243
Alignment:
| Q |
1 |
aaagagagtcttgcaatctttcttcttggcttctttatgcgcattcctttgaatttatgtgggatttgcatgaagtgcttcaactccattgttgacaatc |
100 |
Q |
| |
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|||||||| ||||| || ||||||||||||||| |||| ||||| || |||| |||||||| ||| | |||||||||||| | |||||||||||| | |
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| T |
33699422 |
aaagagagccttgcgttccttcttcttggcttctctatgtgcatttctctgaacatatgtggggttttctggaagtgcttcaatttcattgttgacaagc |
33699323 |
T |
|
| Q |
101 |
tcaagaacatcttgaaacccaaagatcaccttcatttgtttcacccatcttccccaattcttcccatcaagaactggtaa |
180 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||| ||||||||||| || |||||||||| ||||||| || |||||| |
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|
| T |
33699322 |
tcaagaacatattgaaatccaaagatgactttcatctgtttcacccacctgtcccaattctttccatcaaaaattggtaa |
33699243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 33682368 - 33682222
Alignment:
| Q |
1 |
aaagagagtcttgcaatctttcttcttggcttctttatgcgcattcctttgaatttatgtgggatttgcatgaagtgcttcaactccattgttgacaatc |
100 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||| |||| ||||| || |||| |||||||| ||| | |||||||||||| | |||||||||||| | |
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| T |
33682368 |
aaagagagccttgcgttccttcttcttggcttctctatgtgcatttctctgaacatatgtggggttttctggaagtgcttcaatttcattgttgacaagc |
33682269 |
T |
|
| Q |
101 |
tcaagaacatcttgaaacccaaagatcaccttcatttgtttcaccca |
147 |
Q |
| |
|
|||||||||| |||||| |||||||| || ||||| ||||||||||| |
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| T |
33682268 |
tcaagaacatattgaaatccaaagatgactttcatctgtttcaccca |
33682222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 2740591 - 2740479
Alignment:
| Q |
79 |
ttcaactccattgttgacaatctcaagaacatcttgaaacccaaagatcaccttcatttgtttcacccatcttccccaattcttcccatcaagaactggt |
178 |
Q |
| |
|
||||||||||||||| |||| ||||| | |||||||| |||| |||||||||||||||||||||||| |||||| ||||| |||||||||||| || |
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| T |
2740591 |
ttcaactccattgttaacaacttcaagcatgtcttgaaattcaaaaatcaccttcatttgtttcacccattttccccggttctt-ccatcaagaactcgt |
2740493 |
T |
|
| Q |
179 |
aaatgtgcagagat |
192 |
Q |
| |
|
|||||||||||||| |
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|
| T |
2740492 |
aaatgtgcagagat |
2740479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 2228861 - 2228798
Alignment:
| Q |
82 |
aactccattgttgacaatctcaagaacatcttgaaacccaaagatcaccttcatttgtttcacc |
145 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| |||||| | |||||| ||||||||| |
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|
| T |
2228861 |
aactccattgttaacaatctcaataacatcttgaaacctaaagattaacttcatctgtttcacc |
2228798 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14637415 - 14637371
Alignment:
| Q |
1 |
aaagagagtcttgcaatctttcttcttggcttctttatgcgcatt |
45 |
Q |
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||||||| ||||||||||||||||||||||||||| || ||||| |
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| T |
14637415 |
aaagagacccttgcaatctttcttcttggcttctttgtgtgcatt |
14637371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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