View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_11 (Length: 306)
Name: NF18028_low_11
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 2677564 - 2677850
Alignment:
| Q |
1 |
tcaaacagttgtttgggttgcaaacagagaaaaaccacttaataactcaagtggaaacttaacaattggtgctgatgggaatattttacttgtcgatgga |
100 |
Q |
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| T |
2677564 |
tcaaacagttgtttgggttgcaaacagagaaaaaccacttaataactcaagtggaaacttaacaattggtgctgatgggaatattttacttgtcgatgga |
2677663 |
T |
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| Q |
101 |
gtaggtaacaaaatatggtatacaaattcatcaaggtcaattcaggagccacttgcaaagttgttagattctggaaacttggtcttgatggatggaaaga |
200 |
Q |
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| T |
2677664 |
gtaggtaacaaaatatggtatacaaattcatcaaggtcaattcaggagccacttgcaaagttgttagattctggaaacttggtcttgatggatggaaaga |
2677763 |
T |
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| Q |
201 |
accatgattctaatagttacatatggcaaagctttgattatcctacagacacaatgttacctggcatgaagttgggttgggataagg |
287 |
Q |
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| T |
2677764 |
accatgattctaatagttacatatggcaaagctttgattatcctacagacacaatgttacctggcatgaagttgggttgggataagg |
2677850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 113 - 261
Target Start/End: Complemental strand, 3052836 - 3052682
Alignment:
| Q |
113 |
atatggtatacaaattcatcaaggtcaattcaggagccacttgcaaagttgttagattctggaaacttggtcttgatggatggaaaga--accatgattc |
210 |
Q |
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||||||| ||||||||||||| | |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| | |||||||| |
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| T |
3052836 |
atatggtctacaaattcatcaggatcaattcaagagccacttgcaaaaatgttagattctggaaacttggtcttgaaggatggagagattaacatgattc |
3052737 |
T |
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| Q |
211 |
taatagttacatatggcaaagct----ttgattatcctacagacacaatgttacc |
261 |
Q |
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| T |
3052736 |
ttctaattgcacatggcaaagctttgattgattatccaacagacacaatgttacc |
3052682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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