View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18028_low_12 (Length: 304)

Name: NF18028_low_12
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18028_low_12
NF18028_low_12
[»] chr1 (38 HSPs)
chr1 (14-174)||(2508862-2509022)
chr1 (235-304)||(49444981-49445050)
chr1 (167-234)||(2509217-2509284)
chr1 (235-304)||(8337921-8337990)
chr1 (235-304)||(34062208-34062277)
chr1 (244-304)||(38674573-38674633)
chr1 (241-298)||(4609072-4609129)
chr1 (236-301)||(46334019-46334084)
chr1 (235-298)||(38674504-38674567)
chr1 (230-304)||(48993987-48994070)
chr1 (242-304)||(15220817-15220879)
chr1 (235-304)||(29179667-29179745)
chr1 (242-296)||(48823891-48823945)
chr1 (244-304)||(29371376-29371436)
chr1 (242-298)||(46333952-46334008)
chr1 (234-273)||(46931986-46932025)
chr1 (235-304)||(48498405-48498483)
chr1 (249-298)||(1819502-1819551)
chr1 (242-298)||(28928785-28928841)
chr1 (241-297)||(32157602-32157658)
chr1 (234-304)||(5995358-5995437)
chr1 (235-273)||(37155036-37155074)
chr1 (235-273)||(44706894-44706932)
chr1 (248-298)||(47303471-47303521)
chr1 (259-304)||(741572-741617)
chr1 (242-298)||(37155122-37155179)
chr1 (239-283)||(7788259-7788303)
chr1 (241-273)||(36290517-36290549)
chr1 (242-273)||(48993914-48993945)
chr1 (242-273)||(49444910-49444941)
chr1 (242-296)||(9157388-9157442)
chr1 (244-298)||(34062285-34062339)
chr1 (262-304)||(37155072-37155114)
chr1 (242-279)||(5694896-5694933)
chr1 (244-273)||(15220921-15220950)
chr1 (242-298)||(8337858-8337913)
chr1 (241-301)||(33219578-33219638)
chr1 (249-285)||(36290428-36290464)
[»] chr4 (30 HSPs)
chr4 (235-304)||(42375009-42375078)
chr4 (235-304)||(47404655-47404724)
chr4 (242-298)||(47404591-47404647)
chr4 (242-304)||(55090066-55090128)
chr4 (235-304)||(53954609-53954678)
chr4 (242-298)||(50384111-50384167)
chr4 (242-298)||(55090002-55090058)
chr4 (233-288)||(31430544-31430599)
chr4 (236-304)||(51265436-51265513)
chr4 (242-298)||(24006076-24006132)
chr4 (234-304)||(23444339-23444418)
chr4 (235-304)||(6271692-6271770)
chr4 (242-304)||(52028555-52028617)
chr4 (242-295)||(31430467-31430520)
chr4 (237-304)||(30861844-30861920)
chr4 (242-298)||(40789255-40789311)
chr4 (242-298)||(45591416-45591472)
chr4 (249-304)||(40789192-40789247)
chr4 (247-294)||(55089888-55089935)
chr4 (262-304)||(47661868-47661910)
chr4 (250-298)||(52028625-52028673)
chr4 (262-301)||(3862619-3862658)
chr4 (262-301)||(3871376-3871415)
chr4 (259-298)||(26186039-26186078)
chr4 (242-273)||(42375120-42375151)
chr4 (242-284)||(24006152-24006194)
chr4 (242-279)||(19184554-19184591)
chr4 (244-273)||(47661952-47661981)
chr4 (262-298)||(47762684-47762720)
chr4 (244-284)||(55516950-55516990)
[»] chr6 (11 HSPs)
chr6 (235-304)||(12343099-12343168)
chr6 (242-304)||(31654311-31654373)
chr6 (235-304)||(10521919-10521988)
chr6 (242-298)||(551171-551227)
chr6 (242-304)||(24618671-24618733)
chr6 (242-295)||(10521855-10521908)
chr6 (234-298)||(24975741-24975814)
chr6 (230-273)||(13043433-13043476)
chr6 (262-304)||(551235-551277)
chr6 (263-304)||(24587488-24587529)
chr6 (244-280)||(13766746-13766782)
[»] chr5 (23 HSPs)
chr5 (236-304)||(3899839-3899907)
chr5 (234-304)||(16971142-16971212)
chr5 (233-285)||(2953195-2953247)
chr5 (242-304)||(28818923-28818985)
chr5 (242-298)||(3180066-3180122)
chr5 (234-304)||(19598321-19598400)
chr5 (262-304)||(3180130-3180172)
chr5 (248-298)||(16439214-16439264)
chr5 (235-273)||(19655148-19655186)
chr5 (262-304)||(30117898-30117940)
chr5 (242-303)||(38134444-38134505)
chr5 (235-273)||(291087-291125)
chr5 (262-304)||(16439164-16439206)
chr5 (242-304)||(26662405-26662467)
chr5 (242-304)||(26934000-26934062)
chr5 (262-304)||(29699393-29699435)
chr5 (242-298)||(19598408-19598463)
chr5 (262-298)||(28818993-28819029)
chr5 (242-273)||(2953300-2953331)
chr5 (242-273)||(16971254-16971285)
chr5 (262-303)||(291123-291164)
chr5 (249-298)||(6912310-6912359)
chr5 (244-273)||(39777050-39777079)
[»] chr7 (25 HSPs)
chr7 (233-304)||(29053384-29053455)
chr7 (244-304)||(4649328-4649388)
chr7 (238-304)||(42628297-42628363)
chr7 (232-304)||(11016856-11016937)
chr7 (242-298)||(34854701-34854757)
chr7 (235-304)||(38975795-38975873)
chr7 (244-298)||(29053322-29053376)
chr7 (235-273)||(34854805-34854843)
chr7 (235-273)||(41018338-41018376)
chr7 (242-295)||(27028799-27028852)
chr7 (242-298)||(41018234-41018290)
chr7 (237-273)||(45231960-45231996)
chr7 (234-273)||(48000683-48000722)
chr7 (248-298)||(4649398-4649448)
chr7 (242-288)||(45231860-45231906)
chr7 (237-304)||(4290537-4290613)
chr7 (260-304)||(7671981-7672025)
chr7 (242-273)||(11016979-11017010)
chr7 (242-273)||(42628405-42628436)
chr7 (262-304)||(27028863-27028905)
chr7 (242-284)||(30165337-30165379)
chr7 (263-304)||(10419485-10419526)
chr7 (262-303)||(27028754-27028795)
chr7 (262-298)||(38975881-38975917)
chr7 (229-273)||(41945965-41946009)
[»] chr2 (22 HSPs)
chr2 (233-304)||(6217294-6217365)
chr2 (235-304)||(38933586-38933655)
chr2 (236-304)||(29925640-29925708)
chr2 (233-298)||(15011356-15011421)
chr2 (242-304)||(2893969-2894031)
chr2 (242-304)||(14229423-14229484)
chr2 (235-304)||(37961705-37961774)
chr2 (248-304)||(2828596-2828652)
chr2 (239-295)||(9172984-9173040)
chr2 (244-298)||(2894039-2894093)
chr2 (235-273)||(16514414-16514452)
chr2 (242-298)||(14464561-14464617)
chr2 (235-273)||(29508801-29508839)
chr2 (235-273)||(37632981-37633019)
chr2 (248-303)||(2143943-2143998)
chr2 (242-273)||(38933697-38933728)
chr2 (233-271)||(1992233-1992271)
chr2 (243-273)||(6217222-6217252)
chr2 (235-273)||(9173091-9173129)
chr2 (255-295)||(2828663-2828703)
chr2 (262-298)||(6217250-6217286)
chr2 (262-298)||(14229379-14229415)
[»] chr3 (28 HSPs)
chr3 (235-303)||(1801566-1801634)
chr3 (242-304)||(47677325-47677387)
chr3 (242-298)||(33689252-33689308)
chr3 (242-298)||(55223308-55223364)
chr3 (254-304)||(1801516-1801566)
chr3 (235-273)||(41752954-41752992)
chr3 (234-275)||(47492155-47492196)
chr3 (242-298)||(18321727-18321783)
chr3 (244-304)||(30476544-30476604)
chr3 (242-298)||(43139715-43139771)
chr3 (233-273)||(43139819-43139859)
chr3 (242-300)||(1272499-1272557)
chr3 (242-304)||(29031784-29031846)
chr3 (242-292)||(49414505-49414555)
chr3 (242-284)||(49418697-49418739)
chr3 (235-273)||(51046183-51046221)
chr3 (249-298)||(29031727-29031776)
chr3 (242-273)||(1272559-1272590)
chr3 (242-273)||(1801443-1801474)
chr3 (242-273)||(45103106-45103137)
chr3 (232-304)||(33689163-33689244)
chr3 (259-304)||(49418761-49418806)
chr3 (262-298)||(1801472-1801508)
chr3 (242-290)||(17547059-17547107)
chr3 (242-298)||(30476480-30476536)
chr3 (263-303)||(30580827-30580867)
chr3 (262-298)||(41753040-41753076)
chr3 (242-298)||(47677261-47677317)
[»] scaffold0047 (2 HSPs)
scaffold0047 (237-304)||(63758-63825)
scaffold0047 (246-298)||(63833-63885)
[»] scaffold0016 (2 HSPs)
scaffold0016 (235-304)||(49773-49842)
scaffold0016 (242-271)||(49700-49729)
[»] chr8 (21 HSPs)
chr8 (235-304)||(39850954-39851023)
chr8 (242-298)||(8243394-8243450)
chr8 (234-304)||(8243458-8243537)
chr8 (234-304)||(33841661-33841740)
chr8 (235-304)||(5033151-5033229)
chr8 (236-304)||(35441039-35441116)
chr8 (242-298)||(34541809-34541865)
chr8 (242-304)||(6296611-6296673)
chr8 (242-298)||(34229717-34229773)
chr8 (235-304)||(2581815-2581893)
chr8 (235-273)||(22649835-22649873)
chr8 (235-304)||(34541873-34541941)
chr8 (242-273)||(5033271-5033302)
chr8 (242-273)||(33841588-33841619)
chr8 (262-304)||(5667123-5667165)
chr8 (235-273)||(5667207-5667245)
chr8 (236-270)||(10086748-10086782)
chr8 (263-304)||(8796449-8796490)
chr8 (244-297)||(39139838-39139891)
chr8 (247-279)||(36766175-36766207)
chr8 (233-273)||(45191237-45191277)
[»] scaffold0161 (2 HSPs)
scaffold0161 (232-273)||(27330-27371)
scaffold0161 (242-270)||(27217-27245)
[»] scaffold1033 (1 HSPs)
scaffold1033 (242-298)||(2289-2345)
[»] scaffold1029 (1 HSPs)
scaffold1029 (242-298)||(2289-2345)
[»] scaffold0586 (1 HSPs)
scaffold0586 (262-304)||(7117-7159)
[»] scaffold0481 (1 HSPs)
scaffold0481 (246-298)||(2897-2949)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 2508862 - 2509022
Alignment:
Q  14 aaaaaacactaaaattatcgaagtatttttcacattttacatataatacaaaccatttcagttctttatgctaagttagtggagagtgacaatcatattt 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2508862 aaaatacactaaaattatcgaagtatttttcacattttacatataatacaaaccatttcagttctttatgctaagttagtggagagtgacaataatattt 2508961  T
Q  114 tttgttaaaagaaatttttaatattacatgctgaaataatttcatttgatatattaacaaa 174  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2508962 tttgttaaaagtaatttttaatattacatgctgaaataatgtcatttgatatattaacaaa 2509022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 49445050 - 49444981
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  49445050 ggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtgtttctc 49444981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 2509217 - 2509284
Alignment:
Q  167 ttaacaaaaatctgttgtaaaatcacatgaatgataaatagttaaacgtttgtttagtcagttaatag 234  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2509217 ttaaaaaaaatctgttgtaaaatcacatgaatgataaatagttaaacgtttgtttagtcggttaatag 2509284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 8337990 - 8337921
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| |||||||||||    
T  8337990 ggaaaatacttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgtttgtgtttctc 8337921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 34062208 - 34062277
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  34062208 ggaaaatatttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttatgtttctc 34062277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 38674633 - 38674573
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  38674633 ttgggtgacatagagttgggtgatattggccaatcataatgtcacaatgcttgtgtttctc 38674573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 4609129 - 4609072
Alignment:
Q  241 tacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  4609129 tacttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtg 4609072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 46334084 - 46334019
Alignment:
Q  236 gaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgttt 301  Q
    ||||||||||||||||||||||||||| ||||||||  |||||| |||| ||||||||||||||||    
T  46334084 gaaaatacttgggtgacatagagttggatgacattgaccaatcacaatgtcacaatgcttgtgttt 46334019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 38674504 - 38674567
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||| |||| |||||||||||||    
T  38674504 ggaaaatacttgggtgacatggagttgggtgatattggccaatcacaatgtcacaatgcttgtg 38674567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 48994070 - 48993987
Alignment:
Q  230 aatagggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    |||| |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  48994070 aatatggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctc 48993987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 15220817 - 15220879
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||| ||||||||||||||||||||||||  ||  |||||||||||||||||||    
T  15220817 acttgggtgacatggagttgggtgacattggtcaatcacgatctcacaatgcttgtgtttctc 15220879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 29179745 - 29179667
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  29179745 ggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctc 29179667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 48823891 - 48823945
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttg 296  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||    
T  48823891 acttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttg 48823945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 29371376 - 29371436
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||| ||||||||||| |||||| |||| ||||||| |||||||||||    
T  29371376 ttgggtgacatagagttaggtgacattggccaatcacaatgtcacaatgtttgtgtttctc 29371436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 46333952 - 46334008
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||||    
T  46333952 acttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtg 46334008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 46931986 - 46932025
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46931986 gggaaaatacttgggtgacatagagttgggtgacattggt 46932025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 48498405 - 48498483
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgg---------gtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||| |||||||||||    
T  48498405 ggaaaatacttgggtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctc 48498483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 1819502 - 1819551
Alignment:
Q  249 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  1819502 tgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtg 1819551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 28928785 - 28928841
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||| ||||||||||| |||||| |||| |||| ||||||||    
T  28928785 acttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtg 28928841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 32157658 - 32157602
Alignment:
Q  241 tacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgt 297  Q
    ||||||| |||||||||||| |||||||||||||||||| | || ||||||||||||    
T  32157658 tacttggatgacatagagtttggtgacattggtcaatcacagtgtcacaatgcttgt 32157602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 5995358 - 5995437
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||| | ||||||||||         |||||| ||||||||||||||||||||||||    
T  5995358 gggaaaatacttgggtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctc 5995437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 37155036 - 37155074
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  37155036 ggaaaatacttgggtgacatagagtttggtgacattggt 37155074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 44706932 - 44706894
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  44706932 ggaaaatatttgggtgacatagagttgggtgacattggt 44706894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 47303521 - 47303471
Alignment:
Q  248 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||| |||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtg 47303471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 741617 - 741572
Alignment:
Q  259 ttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||| |||| |||| |||||||||||||||||||    
T  741617 ttgggtgacattggtcgatcacaatgtcacaatgcttgtgtttctc 741572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 37155179 - 37155122
Alignment:
Q  242 acttgggtgaca-tagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||| ||||||||||||||||||| |||||| |||| |||||| ||||||    
T  37155179 acttgggtgacaatagagttgggtgacattggccaatcacaatgtcacaatacttgtg 37155122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 7788259 - 7788303
Alignment:
Q  239 aatacttgggtgacatagagttgggtgacattggtcaatcataat 283  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||    
T  7788259 aatacttgggtgacatagagttgggcgatgttggtcaatcataat 7788303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 36290549 - 36290517
Alignment:
Q  241 tacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||||    
T  36290549 tacttgggtgacatagagttgggtgacattggt 36290517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 48993914 - 48993945
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  48993914 acttgggtgacatagagttgggtgacattggt 48993945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 49444910 - 49444941
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  49444910 acttgggtgacatagagttgggtgacattggt 49444941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 9157442 - 9157388
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttg 296  Q
    ||||| ||||||||||||||| |||||||| ||||||| |||  |||||||||||    
T  9157442 acttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgcttg 9157388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 34062339 - 34062285
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||| |||||||||||||||||||||  |||||| |||| ||||||| |||||    
T  34062339 ttgggtaacatagagttgggtgacattgaccaatcacaatgtcacaatgtttgtg 34062285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 37155072 - 37155114
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| |||||| |||| |||||||||||||||||||    
T  37155072 ggtgacattggccaatcacaatgtcacaatgcttgtgtttctc 37155114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 5694896 - 5694933
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatca 279  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  5694896 acttgagtgacatagagtttggtgacattggtcaatca 5694933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Complemental strand, 15220950 - 15220921
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||    
T  15220950 ttgggtgacatagagttgggtgacattggt 15220921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 8337858 - 8337913
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||| ||||| |||||||||| |||||||||||||||| |||| ||||||| |||||    
T  8337858 acttaggtgatatagagttgg-tgacattggtcaatcacaatgtcacaatgtttgtg 8337913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 33219578 - 33219638
Alignment:
Q  241 tacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgttt 301  Q
    |||||| ||||| |||| |||| |||||||| ||||||| ||||  |||||||||||||||    
T  33219578 tacttgagtgacgtagaattggatgacattgatcaatcacaatgttacaatgcttgtgttt 33219638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 36290428 - 36290464
Alignment:
Q  249 tgacatagagttgggtgacattggtcaatcataatgc 285  Q
    |||||||||||||||||||||||| |||||| |||||    
T  36290428 tgacatagagttgggtgacattggccaatcacaatgc 36290464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 42375009 - 42375078
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42375009 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttgtgtttctc 42375078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 47404724 - 47404655
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  47404724 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttgggtttctc 47404655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 47404591 - 47404647
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  47404591 acttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtg 47404647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 55090128 - 55090066
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||    
T  55090128 acttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgtctctc 55090066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 53954609 - 53954678
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||| |||| ||||||||| |||||||||    
T  53954609 ggaaaatacttgggtgatataaagttgggtgacattggccaatcacaatgtcacaatgctagtgtttctc 53954678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 50384111 - 50384167
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  50384111 acttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtg 50384167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 55090002 - 55090058
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  55090002 acttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtg 55090058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 31430599 - 31430544
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccac 288  Q
    |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  31430599 agggaaaatacttgggtgacatagagttgggtgacattggccaattacaatgccac 31430544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 51265436 - 51265513
Alignment:
Q  236 gaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  51265436 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctc 51265513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 24006076 - 24006132
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||| |||||||||||||||| |||||| |||| |||||||||||||    
T  24006076 acttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtg 24006132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 23444418 - 23444339
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||| ||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  23444418 gggaaaatatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctc 23444339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 6271692 - 6271770
Alignment:
Q  235 ggaaaatacttgggtgacatagagttg---------ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||         ||||||||||| |||||| ||||||||||||||||||||||||    
T  6271692 ggaaaatacttgggtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctc 6271770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 52028555 - 52028617
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||| ||||||| |||||||||||    
T  52028555 acttgggtgacatagagttgggtgatattggccaatcacgatgtcacaatgtttgtgtttctc 52028617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 31430467 - 31430520
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 295  Q
    ||||||||||||||||||||||||||||||  |||||| |||| ||||||||||    
T  31430467 acttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgctt 31430520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 30861920 - 30861844
Alignment:
Q  237 aaaatacttgggtgacatagagttgg---------gtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||||||    
T  30861920 aaaatacttgggtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctc 30861844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 40789311 - 40789255
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||| ||||| ||||| |||||| |||| |||||||||||||    
T  40789311 acttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtg 40789255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 45591416 - 45591472
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| |||| ||||||||||||| |||| ||||||||||||| |||||||||||||    
T  45591416 acttgtgtgatatagagttgggtggcattcgtcaatcataatgtcacaatgcttgtg 45591472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 40789192 - 40789247
Alignment:
Q  249 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||| ||||||||||| |||||| |||| ||||||| |||||||||||    
T  40789192 tgacatagagtttggtgacattggccaatcacaatgtcacaatgtttgtgtttctc 40789247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 55089888 - 55089935
Alignment:
Q  247 ggtgacatagagttgggtgacattggtcaatcataatgccacaatgct 294  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  55089888 ggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgct 55089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 47661868 - 47661910
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  47661868 ggtgacattggccaatcacaatgccacaatgcttgtgtttctc 47661910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 52028673 - 52028625
Alignment:
Q  250 gacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||| |||||||||||||| |||||| |||| |||||||||||||    
T  52028673 gacatagaattgggtgacattggccaatcacaatgtcacaatgcttgtg 52028625  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 3862658 - 3862619
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgttt 301  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  3862658 ggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 3871415 - 3871376
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgttt 301  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  3871415 ggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 26186039 - 26186078
Alignment:
Q  259 ttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  26186039 ttgggtgacattggtcaatcacaatgtcacaatgcttgtg 26186078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 42375151 - 42375120
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  42375151 acttgggtgacatagagttgggtgacattggt 42375120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 24006194 - 24006152
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatg 284  Q
    ||||||||||||||||||||||||||||||  |||||| ||||    
T  24006194 acttgggtgacatagagttgggtgacattgaccaatcacaatg 24006152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 19184591 - 19184554
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatca 279  Q
    ||||||||||| || |||||||||||||||||||||||    
T  19184591 acttgggtgacgtaaagttgggtgacattggtcaatca 19184554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Complemental strand, 47661981 - 47661952
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||    
T  47661981 ttgggtgacatagagttgggtgacattggt 47661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 47762720 - 47762684
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  47762720 ggtgacattggtcaaccataatgtcacaatgcttgtg 47762684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 55516990 - 55516950
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatg 284  Q
    |||||||||||| | || |||||||||||||||||||||||    
T  55516990 ttgggtgacatataatttggtgacattggtcaatcataatg 55516950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 12343099 - 12343168
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  12343099 ggaaaatacttgggtgacatagagttgggtgacattagtcaatcacaatgccacaatgcttgtgtttctc 12343168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 31654311 - 31654373
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  31654311 acttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgtttctc 31654373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 10521988 - 10521919
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||    
T  10521988 ggaaaatactatggtgacatagagttgagtgacattggtcaatcacaatgtcataatgcttgtgtttctc 10521919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 551171 - 551227
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  551171 acttgggtggcatagagttgggtgacattggtcaatcacaatgccacaatgtttgtg 551227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 24618733 - 24618671
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||| |||  |||||| |||| |||||||||||||||||||    
T  24618733 acttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttgtgtttctc 24618671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 10521855 - 10521908
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 295  Q
    ||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||    
T  10521855 acttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgctt 10521908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 24975741 - 24975814
Alignment:
Q  234 gggaaaatacttgggtgacatagagttg---------ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||    
T  24975741 gggaaaatacttgggtgacatagagttggctgacattggtgacattggtcaatcacaatgccacaatgcttgtg 24975814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 13043433 - 13043476
Alignment:
Q  230 aatagggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  13043433 aatagggaaaatatttgggtgacatagaattgggtgacattggt 13043476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 551277 - 551235
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  551277 ggtgacattggccaatcacaatgccacaatgcttgtgtttctc 551235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 24587488 - 24587529
Alignment:
Q  263 gtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  24587488 gtgacattggtcaatcacaatgtcacaatgcttgtgtttctc 24587529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 13766746 - 13766782
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcat 280  Q
    ||||||||||||||||||||||||||||  |||||||    
T  13766746 ttgggtgacatagagttgggtgacattgaccaatcat 13766782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 3899839 - 3899907
Alignment:
Q  236 gaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  3899839 gaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtgtttctc 3899907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 16971142 - 16971212
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  16971142 gggaaaatacttgggtgacatagacttgggtgacattggccaatcacaatgccacaatgcttgtgtttctc 16971212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 2953195 - 2953247
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2953195 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcacaatgc 2953247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 28818923 - 28818985
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||    
T  28818923 acttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatacttgtatttctc 28818985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 3180066 - 3180122
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||    
T  3180066 acttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatgtttgtg 3180122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 19598321 - 19598400
Alignment:
Q  234 gggaaaatacttgggtgacatagagttg---------ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||| ||| ||||||||||||||||||||    
T  19598321 gggaaaatacttgggtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctc 19598400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 3180172 - 3180130
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  3180172 ggtgacattggtcaatcacaatgccacaatgcttgtgtttctc 3180130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 16439264 - 16439214
Alignment:
Q  248 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  16439264 gtgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtg 16439214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 19655148 - 19655186
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19655148 ggaaaatacttgggtgacatagagttgggtgacattggt 19655186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 30117940 - 30117898
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  30117940 ggtgatattggtcaatcataatgccacaatgcttgtgtttctc 30117898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 38134505 - 38134444
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttct 303  Q
    ||||||| ||||||||||||| ||| ||||| |||||| |||| ||||||||||||||||||    
T  38134505 acttgggcgacatagagttggatgatattggccaatcacaatgtcacaatgcttgtgtttct 38134444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 291087 - 291125
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  291087 ggaaaatacttgagtgacatagagttgggtgacattggt 291125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 16439164 - 16439206
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  16439164 ggtgacattggtcaatcacaatgtcacaatgcttgtgtttctc 16439206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 26662405 - 26662467
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||| ||||||||||||||||||||||||  |||||| ||||  ||| ||||||||||||||    
T  26662405 acttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtgtttctc 26662467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 26934000 - 26934062
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||| ||||||||||||||||||||||||  |||||| ||||  ||| ||||||||||||||    
T  26934000 acttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtgtttctc 26934062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 29699393 - 29699435
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| |||||| ||||||||||||||||||||||||    
T  29699393 ggtgacattggccaatcacaatgccacaatgcttgtgtttctc 29699435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 19598463 - 19598408
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||||||||||||||   ||||||||||| || ||||||||||    
T  19598463 acttgggtgacatagagttgggtgacattaaccaatcataatgtca-aatgcttgtg 19598408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 28819029 - 28818993
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28819029 ggtgacattggtcaatcataatgtcacaatgcttgtg 28818993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 2953331 - 2953300
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  2953331 acttgggtgacatagagttgggtgacattggt 2953300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 16971285 - 16971254
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  16971285 acttgggtgacatagagttgggtgacattggt 16971254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 291123 - 291164
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttct 303  Q
    ||||||||||| |||||| ||||||||||||||||| |||||    
T  291123 ggtgacattggccaatcacaatgccacaatgcttgtatttct 291164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 6912310 - 6912359
Alignment:
Q  249 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||| | ||||||| |||||||| |||| |||||||||||||    
T  6912310 tgacatagagttagttgacattagtcaatcacaatgtcacaatgcttgtg 6912359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 39777050 - 39777079
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||    
T  39777050 ttgggtgacatagagttgggtgacattggt 39777079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 29053455 - 29053384
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  29053455 agggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctc 29053384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 4649328 - 4649388
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  4649328 ttgggtgacatagagttgggtgacattggtcaatcacaatgctacaatgcttgtgtttctc 4649388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 42628297 - 42628363
Alignment:
Q  238 aaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||| ||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||    
T  42628297 aaatatttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgcttatgtttctc 42628363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 11016856 - 11016937
Alignment:
Q  232 tagggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  11016856 tagggaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctc 11016937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 34854701 - 34854757
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  34854701 acttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtg 34854757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 38975795 - 38975873
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtg---------acattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||||    
T  38975795 ggaaaatacttgggtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctc 38975873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 29053322 - 29053376
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||    
T  29053322 ttgggtgacatagagtttggtgacattggccaatcacaatgcctcaatgcttgtg 29053376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 34854843 - 34854805
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34854843 ggaaaatacttgggtgacatagagttgggtgacattggt 34854805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 41018376 - 41018338
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41018376 ggaaaatacttgggtgacatagagttgggtgacattggt 41018338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 27028799 - 27028852
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 295  Q
    ||||||||||||||||||||||| ||||||| |||||| |||| ||||||||||    
T  27028799 acttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgctt 27028852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 41018234 - 41018290
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||| |||||||||||||||||||||||| |||||| |||| | |||||||||||    
T  41018234 acttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgcttgtg 41018290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 45231996 - 45231960
Alignment:
Q  237 aaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||||||||    
T  45231996 aaaatacttgggtgacatagagttgggtgacattggt 45231960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 273
Target Start/End: Original strand, 48000683 - 48000722
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  48000683 gggaaaatacttgggtgacattgagttgggtgacattggt 48000722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 4649448 - 4649398
Alignment:
Q  248 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||| |||||||||||||||||| |||| ||| |||||||||    
T  4649448 gtgacatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtg 4649398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 45231860 - 45231906
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccac 288  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||    
T  45231860 acttgggtgacatagagttgggtgacattgaccaatcacaatgccac 45231906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 4290537 - 4290613
Alignment:
Q  237 aaaatacttgggtgacatagagttgggtgacattg---------gtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||| ||||         |||||||| |||||||||||||| |||||||||    
T  4290537 aaaatacttgggtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctc 4290613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 7672025 - 7671981
Alignment:
Q  260 tgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||| |||||| |||||||||||| |||||||||||    
T  7672025 tgggtgacattggccaatcacaatgccacaatgtttgtgtttctc 7671981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 11017010 - 11016979
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  11017010 acttgggtgacatagagttgggtgacattggt 11016979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 42628436 - 42628405
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  42628436 acttgggtgacatagagttgggtgacattggt 42628405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 27028905 - 27028863
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||| |||| ||||||| |||||||||||    
T  27028905 ggtgacattggtcaatcacaatgtcacaatgtttgtgtttctc 27028863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 30165379 - 30165337
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatg 284  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||    
T  30165379 acttgtgtgatatagagttgggtgacattggtcaatcacaatg 30165337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 10419485 - 10419526
Alignment:
Q  263 gtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  10419485 gtgacattggtcaatcataatgttacaatacttgtgtttctc 10419526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 27028754 - 27028795
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttct 303  Q
    ||||||||||| |||||| |||| ||||||||||||||||||    
T  27028754 ggtgacattggacaatcacaatgtcacaatgcttgtgtttct 27028795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 38975917 - 38975881
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  38975917 ggtgacattgatcaattataatgccacaatgcttgtg 38975881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 41946009 - 41945965
Alignment:
Q  229 taatagggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||| || |||||||||||||| ||||| |||||||||||    
T  41946009 taatagggataacacttgggtgacataaagttgagtgacattggt 41945965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 6217365 - 6217294
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  6217365 agggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctc 6217294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 38933586 - 38933655
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  38933586 ggaaaatacttaggtgacatagagttgggtgacattgaccaatcacaatgccacaatgcttgtgtttctc 38933655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 29925708 - 29925640
Alignment:
Q  236 gaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  29925708 gaaaatacttgggtaacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctc 29925640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 15011421 - 15011356
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| ||||||||||||||||||||||| |||||||||| |||||| |||| |||||||||||||    
T  15011421 agggataatacttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtg 15011356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 2893969 - 2894031
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||| |||||| |||  |||||||||||| ||||||    
T  2893969 acttgggtgacatagagttgggtgacattggccaatcacaatctcacaatgcttgtatttctc 2894031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 14229484 - 14229423
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||    
T  14229484 acttgggtgacatagagttggatgacattgg-caatcacaatgtcacaatgcttgtgtttctc 14229423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 37961705 - 37961774
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| ||||||| |||| |||||||||||    
T  37961705 ggaaaatacttgggtggcatagagttgggtgacattgaccgatcacaatgccataatgtttgtgtttctc 37961774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 2828596 - 2828652
Alignment:
Q  248 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||    
T  2828596 gtgacatagagttgggtgacattggccaatcacaatgtcaaaatgcttgtgtttctc 2828652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 9172984 - 9173040
Alignment:
Q  239 aatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgctt 295  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||| |||||||    
T  9172984 aatacttgggtgacatagagttgggtgacattggttcatcagaatgccataatgctt 9173040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 2894093 - 2894039
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||| |||||||||||||||| | || |||||||||||||    
T  2894093 ttgggtgacatagagttggatgacattggtcaatcacagtgtcacaatgcttgtg 2894039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 16514414 - 16514452
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16514414 ggaaaatacttgggtgacatagagttgggtgacattggt 16514452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 14464561 - 14464617
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| |||||||||||||| ||||||||||||||||| |||| |||||| ||||||    
T  14464561 acttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttgtg 14464617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 29508839 - 29508801
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  29508839 ggaaaatacttgggtgacatagagttgggtgatattggt 29508801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 37632981 - 37633019
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  37632981 ggaaaatacttgggtgacatagagtttggtgacattggt 37633019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 2143998 - 2143943
Alignment:
Q  248 gtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttct 303  Q
    |||||||||||||| ||||| |||| |||||| |||| || |||||||||||||||    
T  2143998 gtgacatagagttgagtgacgttggccaatcacaatgtcataatgcttgtgtttct 2143943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 38933728 - 38933697
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  38933728 acttgggtgacatagagttgggtgacattggt 38933697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 1992233 - 1992271
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattg 271  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  1992233 agggaaaatacttggatgacatagagttaggtgacattg 1992271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 6217222 - 6217252
Alignment:
Q  243 cttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||    
T  6217222 cttgggtgacatagagttgggtgacattggt 6217252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 9173129 - 9173091
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||| || |||||||||||||||||||||||||||    
T  9173129 ggaaaatatttaggtgacatagagttgggtgacattggt 9173091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 2828703 - 2828663
Alignment:
Q  255 agagttgggtgacattggtcaatcataatgccacaatgctt 295  Q
    |||||||||||||||||| |||||| |||| ||||||||||    
T  2828703 agagttgggtgacattggccaatcacaatgtcacaatgctt 2828663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 6217250 - 6217286
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6217250 ggtgacattggccaatcacaatgccacaatgcttgtg 6217286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 14229379 - 14229415
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||| |||| |||||||||||||    
T  14229379 ggtgacattggtcaatcacaatgtcacaatgcttgtg 14229415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 1801634 - 1801566
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttct 303  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  1801634 ggaaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttct 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 47677387 - 47677325
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||| |||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||    
T  47677387 acttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgtttgtgtttctc 47677325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 33689308 - 33689252
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||    
T  33689308 acttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtg 33689252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 55223364 - 55223308
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||||  |||| ||||||||||||||||| |||||||||||||    
T  55223364 acttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgcttgtg 55223308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 1801566 - 1801516
Alignment:
Q  254 tagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  1801566 tagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctc 1801516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 41752954 - 41752992
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41752954 ggaaaatacttgggtgacatagagttgggtgacattggt 41752992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 47492196 - 47492155
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacattggtca 275  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  47492196 gggaaaatagttgggtgacatagagttgggtgacattggtca 47492155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 18321783 - 18321727
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||| |||||||||||||| |||||||||||||||| |||| |||||||| ||||    
T  18321783 acttggatgacatagagttggatgacattggtcaatcacaatgtcacaatgcatgtg 18321727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 30476604 - 30476544
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||| || ||||||||  ||||||||||||||||| |||| |||||||||||||||||||    
T  30476604 ttgggggatatagagttatgtgacattggtcaatcacaatgtcacaatgcttgtgtttctc 30476544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 43139715 - 43139771
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| |||||||||||||||||||||| ||||||||| |||| || ||||||||||    
T  43139715 acttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtg 43139771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 43139859 - 43139819
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  43139859 agggaaaatatttgggtgacatagagttgggtgacattggt 43139819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 1272499 - 1272557
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtt 300  Q
    |||| |||||||||||||| ||||||||||| |||||| | || |||||||||||||||    
T  1272499 acttaggtgacatagagtttggtgacattggccaatcaaattgtcacaatgcttgtgtt 1272557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 29031846 - 29031784
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||| ||||||||||||| ||||| |||||||||| | |||| ||||||| |||||||||||    
T  29031846 acttgtgtgacatagagttaggtgatattggtcaattacaatgtcacaatgtttgtgtttctc 29031784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 49414555 - 49414505
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatg 292  Q
    ||||||||||||||||||||||||||||||| |||| | |||| |||||||    
T  49414555 acttgggtgacatagagttgggtgacattggccaattacaatgtcacaatg 49414505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 49418697 - 49418739
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatg 284  Q
    ||||||||||||||||||||||||| |||||||||||| ||||    
T  49418697 acttgggtgacatagagttgggtgatattggtcaatcacaatg 49418739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 51046221 - 51046183
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  51046221 ggaaaatacttgggtgacatagagttggatgacattggt 51046183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 29031727 - 29031776
Alignment:
Q  249 tgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||| ||||| |||||||||||| |||| |||||||||||||    
T  29031727 tgacatagagttaggtgatattggtcaatcacaatgtcacaatgcttgtg 29031776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 1272590 - 1272559
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  1272590 acttgggtgacatagagttgggtgacattggt 1272559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 1801443 - 1801474
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  1801443 acttgggtgacatagagttgggtgacattggt 1801474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 45103106 - 45103137
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  45103106 acttgggtgacatagagttgggtgacattggt 45103137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 33689163 - 33689244
Alignment:
Q  232 tagggaaaatacttgggtgacatagagttgggtgacattg---------gtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||| || ||||| ||||||||||||||||||||||||         |||||||| |||| |||||||||||||||||||    
T  33689163 tagggataacacttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctc 33689244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 49418806 - 49418761
Alignment:
Q  259 ttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||| |||||  || ||||||||||||||||    
T  49418806 ttgggtgacattggtcaattataatatcataatgcttgtgtttctc 49418761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 1801472 - 1801508
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  1801472 ggtgacattggccaatcacaatgccacaatgcttgtg 1801508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 17547107 - 17547059
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaa 290  Q
    |||||||||||||||  || ||||||||||||||| ||||||| |||||    
T  17547107 acttgggtgacatagcatttggtgacattggtcaaccataatgtcacaa 17547059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 30476480 - 30476536
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| |||||| |||| | ||||||||||| |||||| |||| |||||||||||||    
T  30476480 acttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtg 30476536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 30580867 - 30580827
Alignment:
Q  263 gtgacattggtcaatcataatgccacaatgcttgtgtttct 303  Q
    ||||||||||||||||| |||| |||| |||||||||||||    
T  30580867 gtgacattggtcaatcacaatgtcacagtgcttgtgtttct 30580827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 41753076 - 41753040
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  41753076 ggtgacattggccaatcacaatgccacaatgcttgtg 41753040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 47677261 - 47677317
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| ||||||||||||| ||||||||||  | |||| |||| |||||||||||||    
T  47677261 acttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgcttgtg 47677317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 63758 - 63825
Alignment:
Q  237 aaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  63758 aaaatacttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctc 63825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 63885 - 63833
Alignment:
Q  246 gggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||| |||||||||||||||||||| |||||| |||| |||||||||||||    
T  63885 gggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtg 63833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 49842 - 49773
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  49842 ggaaaatacttcggtgacatagagttaggtgacattggccaatcacaatgccacaatgcttgtgtttctc 49773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 49700 - 49729
Alignment:
Q  242 acttgggtgacatagagttgggtgacattg 271  Q
    ||||||||||||||||||||||||||||||    
T  49700 acttgggtgacatagagttgggtgacattg 49729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 39850954 - 39851023
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| ||| | |||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  39850954 ggaaaatacttaggtaatatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctc 39851023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 8243394 - 8243450
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  8243394 acttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgcttgtg 8243450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 8243537 - 8243458
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacat---------tggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||| ||||||||||||||||||||||||    
T  8243537 gggaaaatacttgggtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctc 8243458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 33841740 - 33841661
Alignment:
Q  234 gggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  33841740 gggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctc 33841661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 5033151 - 5033229
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  5033151 ggaaaatacttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctc 5033229  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 35441116 - 35441039
Alignment:
Q  236 gaaaatacttgggtgacatagagttgggtgacattggt---------caatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||||    
T  35441116 gaaaatacttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctc 35441039  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 34541809 - 34541865
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    |||||||||||||| |||||||||||||||| ||||||||||  |||||||||||||    
T  34541809 acttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtg 34541865  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 6296611 - 6296673
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||| |||||||||||||||||||||||  |||||| |||| || ||||||||||||||||    
T  6296611 acttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgcttgtgtttctc 6296673  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 34229773 - 34229717
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| ||||||||||||| |||||||||||||||||| |||  |||||||||||||    
T  34229773 acttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtg 34229717  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 2581815 - 2581893
Alignment:
Q  235 ggaaaatacttgggtgacatagagttggg---------tgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||||||||||||| |||||         ||||||||| |||||| ||||||||||||||||||||||||    
T  2581815 ggaaaatacttgggtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctc 2581893  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 22649835 - 22649873
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  22649835 ggaaaatacttgggtgacatagagttgagtgacattggt 22649873  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 34541941 - 34541873
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||||| ||| ||||||||| |||||||||  | | || ||||||||||||||||||||||||    
T  34541941 ggaaaatacttgg-tgatatagagttgagtgacattgacctagcaaaatgccacaatgcttgtgtttctc 34541873  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Complemental strand, 5033302 - 5033271
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  5033302 acttgggtgacatagagttgggtgacattggt 5033271  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 273
Target Start/End: Original strand, 33841588 - 33841619
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggt 273  Q
    ||||||||||||||||||||||||||||||||    
T  33841588 acttgggtgacatagagttgggtgacattggt 33841619  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 5667123 - 5667165
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||||||||||||||||| |||| |||||||||||| ||||||    
T  5667123 ggtgacattggtcaatcacaatgtcacaatgcttgtatttctc 5667165  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 5667245 - 5667207
Alignment:
Q  235 ggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  5667245 ggaaaatacttgggtgacatagagtttgatgacattggt 5667207  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 10086748 - 10086782
Alignment:
Q  236 gaaaatacttgggtgacatagagttgggtgacatt 270  Q
    |||||||||||||||||||||| ||||||||||||    
T  10086748 gaaaatacttgggtgacatagaattgggtgacatt 10086782  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 8796449 - 8796490
Alignment:
Q  263 gtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    |||| |||||||||||| |||| |||||||||||||||||||    
T  8796449 gtgatattggtcaatcacaatgtcacaatgcttgtgtttctc 8796490  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 39139891 - 39139838
Alignment:
Q  244 ttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgt 297  Q
    |||||||||||||  || |||||||||||||||||| |||| |||||| |||||    
T  39139891 ttgggtgacatagtatttggtgacattggtcaatcacaatgtcacaatccttgt 39139838  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 36766175 - 36766207
Alignment:
Q  247 ggtgacatagagttgggtgacattggtcaatca 279  Q
    |||||||||||||||||||||||||||| ||||    
T  36766175 ggtgacatagagttgggtgacattggtcgatca 36766207  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 45191277 - 45191237
Alignment:
Q  233 agggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||| ||||||||||||||||||||||||| ||| ||||||    
T  45191277 aggggaaatacttgggtgacatagagttggatgatattggt 45191237  T

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Target: scaffold0161 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 27371 - 27330
Alignment:
Q  232 tagggaaaatacttgggtgacatagagttgggtgacattggt 273  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  27371 tagggaaaatacttgggtgatatagagttgggtgacattggt 27330  T

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Target: scaffold0161; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 27217 - 27245
Alignment:
Q  242 acttgggtgacatagagttgggtgacatt 270  Q
    |||||||||||||||||||||||||||||    
T  27217 acttgggtgacatagagttgggtgacatt 27245  T

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Target: scaffold1033 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 2345 - 2289
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| |||||||||| ||||| ||||||| ||||||| |||| |||||||||||||    
T  2345 acttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtg 2289  T

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Target: scaffold1029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 2345 - 2289
Alignment:
Q  242 acttgggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||| |||||||||| ||||| ||||||| ||||||| |||| |||||||||||||    
T  2345 acttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtg 2289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 7159 - 7117
Alignment:
Q  262 ggtgacattggtcaatcataatgccacaatgcttgtgtttctc 304  Q
    ||||||||||| |||||| |||| |||||||||||||||||||    
T  7159 ggtgacattggccaatcacaatgtcacaatgcttgtgtttctc 7117  T

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Target: scaffold0481 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 2897 - 2949
Alignment:
Q  246 gggtgacatagagttgggtgacattggtcaatcataatgccacaatgcttgtg 298  Q
    ||||||||||||||||||||| ||||  |||||| |||| ||||||| |||||    
T  2897 gggtgacatagagttgggtgatattgaccaatcacaatgtcacaatgtttgtg 2949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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