View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_13 (Length: 290)
Name: NF18028_low_13
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 43408057 - 43407799
Alignment:
| Q |
24 |
tgaagtgatctccctctcccattcccataggaatattattattgttggacatgtattgtgattgtggcgtagtttgctgcatggacatcaaactgttctc |
123 |
Q |
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| T |
43408057 |
tgaagtgatctccctctcccattcccataggaatattattattgttggacatgtattgtgattgtggcgtagtttgctgcatggccatcaaactattctc |
43407958 |
T |
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| Q |
124 |
acttgcttcaatccagcaaccttctcccaagagctcctcaattatatctgcttgatnnnnnnnnnnnnnnnnnnnnnncaccatcggtccaaacacacca |
223 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43407957 |
acttgcttcaatccagcaaccttctcccaacagctcctcaattatatctgcttgat------ctcctcctcctcctcccaccatcggtccaaacacacca |
43407864 |
T |
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| Q |
224 |
ccgtcagccactaacccaccaccatattccatccttataattaaagttctttctctgctcctcct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |
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| T |
43407863 |
ccgtcagccactaacccaccaccatattccatccttataattaaagttgtttctcagatcctcct |
43407799 |
T |
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