View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_16 (Length: 235)
Name: NF18028_low_16
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_16 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 2500926 - 2501136
Alignment:
| Q |
11 |
aaaaaacaaataaatagtatcccacattcgtgccatct-aatgttgaaattggtcttatgtgtggcattgtagagttcattgagaaaggtatatgtacta |
109 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2500926 |
aaaaaacaaataaatagtatcccacattcgtgctatcttaatgttgaaattggtcttatgtgtggcattgtagagttcattgagaaaggtatatgtacta |
2501025 |
T |
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| Q |
110 |
ctgtttttgacatctcccgacttgtgaaaataaaaaacatgaaataagattagaacatatggatagcatggttgaggaaaaatgtagaaagatgtggttc |
209 |
Q |
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| T |
2501026 |
ctgtttttgacatctcccgacttgtgaaaataaaaaacatgaaataagattagaacatttggatagcatggttgaggaaaaatgtagaaagatgtggttc |
2501125 |
T |
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| Q |
210 |
ggtgttattgt |
220 |
Q |
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||||||||||| |
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| T |
2501126 |
ggtgttattgt |
2501136 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 43942789 - 43942712
Alignment:
| Q |
140 |
taaaaaacatgaaataagattagaacatatggatagcatggttgaggaaaaatgtagaaagatgtggttcggtgttattg |
219 |
Q |
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| T |
43942789 |
taaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaaaga--tggtttggtgttattg |
43942712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 26230675 - 26230820
Alignment:
| Q |
18 |
aaataaatagtatcccacattcgtgccatc-taatgttgaaattggtcttatgtgtggcattgtagagttcattgagaaaggtatatgtactactgtttt |
116 |
Q |
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| T |
26230675 |
aaataaatagtatctcacattcatgctatcctaatgttgaaattggtcttaggtgtagtattgga---tttattgagaaaggtatgtgtacgtctctttt |
26230771 |
T |
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| Q |
117 |
tgacatctcccgacttgtgaaaataaaaaacatgaaataagattagaaca |
166 |
Q |
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|||| |||||| | || |||| |||||||||||||||||| |||||||| |
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| T |
26230772 |
tgacttctcccagcctgcgaaattaaaaaacatgaaataag-ttagaaca |
26230820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 10894 - 10971
Alignment:
| Q |
140 |
taaaaaacatgaaataagattagaacatatggatagcatggttgaggaaaaatgtagaaagatgtggttcggtgttattg |
219 |
Q |
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| T |
10894 |
taaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaaaga--tggtttggtgttattg |
10971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 5885148 - 5885225
Alignment:
| Q |
140 |
taaaaaacatgaaataagattagaacatatggatagcatggttgaggaaaaatgtagaaagatgtggttcggtgttattg |
219 |
Q |
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| T |
5885148 |
taaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaaaga--tggtttggtgttattg |
5885225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 54946165 - 54946242
Alignment:
| Q |
140 |
taaaaaacatgaaataagattagaacatatggatagcatggttgaggaaaaatgtagaaagatgtggttcggtgttattg |
219 |
Q |
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| T |
54946165 |
taaaaaacatgatataagattataacatttagatagcatggtagaggaaaagtgtagaaaga--tggtttggtgttattg |
54946242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 47933363 - 47933440
Alignment:
| Q |
140 |
taaaaaacatgaaataagattagaacatatggatagcatggttgaggaaaaatgtagaaagatgtggttcggtgttattg |
219 |
Q |
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|||||||||||| ||||||||| ||||| | ||||||||||| |||||||| |||||||||| ||||| |||||||||| |
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| T |
47933363 |
taaaaaacatgatataagattataacatttagatagcatggtagaggaaaagtgtagaaaga--tggtttggtgttattg |
47933440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 16856549 - 16856489
Alignment:
| Q |
140 |
taaaaaacatgaaataagattagaacatatggatagcatggttgaggaaaaatgtagaaag |
200 |
Q |
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|||||||||||| || |||||||||||| | ||||||||||| |||||||| ||||||||| |
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| T |
16856549 |
taaaaaacatgatatgagattagaacatttagatagcatggtagaggaaaagtgtagaaag |
16856489 |
T |
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