View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_18 (Length: 218)
Name: NF18028_low_18
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 36919265 - 36919080
Alignment:
| Q |
18 |
ttcttcttcaaaatgcaaagcatttcagcctttagtccatgagcaacctaggactcctccaattcgtcgtgagtgctactcacacccacactctataatt |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36919265 |
ttcttcttcaaagtgcaaagcatttcagcctttagtccatgagcaacctaggactcctccaattcgtcgtgagtgctactcacacccacactctataatt |
36919166 |
T |
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| Q |
118 |
tcctcctaaattgattagccttttgatctactagttnnnnnnnttaaaagagactgaaaaatttcagatccaataacatgaaatat |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36919165 |
tccttctaaattgattagccttttgatctactagttaaaaaaattaaaagaaactgaaaaatttcagatccaataacatgaaatat |
36919080 |
T |
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