View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_5 (Length: 402)
Name: NF18028_low_5
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 28081524 - 28081131
Alignment:
| Q |
1 |
cgccgccatcaacttcgccgcagggtgattcttcttgctacattgaatcctaatcatagcatcccaacccataatcttcacatcaatatccaagtcaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28081524 |
cgccgccatcaacttcgccgcagggtgattcttcttgctgcattgaatcctaatcatagcatcccaacccataatcttcacatcaatatccaagtcaatt |
28081425 |
T |
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| Q |
101 |
aacttagaagggcttgttgagctcgttgttttctccatttctttatctaatggaattggattttgactttgatttttgcttgcaacaagttctaattcct |
200 |
Q |
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|||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28081424 |
aacttagaagagcttgttgagcttgttgttttctccttttctttatctaatggaattggattttgactttgatttttgcttgcaacaagttctaattcct |
28081325 |
T |
|
| Q |
201 |
tctttgttgcacctaattgtatctccaattcgcctttcgacgattccagcccttgtagcttcgatttcaattcatttatataagaaatagcatcgcctag |
300 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
28081324 |
tctttgttgcacctaattgtttctccaattcaccttttgacgattccagcccttgtagcttcgatttcaattcgtttatataagatatagcatcgcctag |
28081225 |
T |
|
| Q |
301 |
gagcgatgctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgct |
394 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28081224 |
cagcgatgctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagcttttctcttctttgtctctctgct |
28081131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 394
Target Start/End: Complemental strand, 9194878 - 9194792
Alignment:
| Q |
308 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgct |
394 |
Q |
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| T |
9194878 |
gctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgct |
9194792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 12886003 - 12885921
Alignment:
| Q |
308 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctc |
390 |
Q |
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||||||||||| || |||||||| ||||| || || || || ||||||||| |||| || ||||| ||||||||||| ||||| |
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| T |
12886003 |
gctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctgattcagcttctctcttctttgcctctc |
12885921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 12886306 - 12886221
Alignment:
| Q |
5 |
gccatcaacttcgccgcagggtgattcttcttgctacattgaatcctaatcatagcatcccaacccataatcttcacatcaatatc |
90 |
Q |
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||||| ||| |||| |||||||| || ||||| || ||||| | ||| ||||| ||||||||||| ||||||||||| || ||||| |
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| T |
12886306 |
gccattaacctcgctgcagggtggtttttcttactgcattggacccttatcattgcatcccaacctataatcttcacgtcgatatc |
12886221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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