View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18028_low_8 (Length: 332)
Name: NF18028_low_8
Description: NF18028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18028_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 40198624 - 40198948
Alignment:
| Q |
3 |
tctcaagtggttaatgtacagcttttggttttggacaagttttttcaattgtatttaccacaatgtggtatctcatatgaaacgaaattatcatattcag |
102 |
Q |
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| T |
40198624 |
tctcaagtggttaatgcacagcttttggttttggacaagttttttcaattgtatttaccacaatgtggtatctcatatgaaacgaaattatcatattcag |
40198723 |
T |
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| Q |
103 |
ttgtgctattacagtcggatagataactaatttgtgcagcaaggaactccttaaataatcaatttaat------taggagcatgtgagtatatggaaaag |
196 |
Q |
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| T |
40198724 |
ttgtgctattacagtcggatagataactaatttgtgcagcaaggaactccttaaataatcaatttaattaggactaggagcatgtgagtatatggaaaag |
40198823 |
T |
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| Q |
197 |
actaaacaaaataattaaactcaatcttttgcaatacagataaatatatgaagtaatatagatcaatatagagagcgtgatatgtgcagccaatacacac |
296 |
Q |
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| T |
40198824 |
actaaacaaaataattaaactcaatcttttgcaatacagttaaatatatgaagtaatatagatcaatatagagagcgtgatatgtgcagccaatacacac |
40198923 |
T |
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| Q |
297 |
attttcctacaaatagcttgatgat |
321 |
Q |
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| T |
40198924 |
attttcctacaaatagcttgatgat |
40198948 |
T |
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