View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18029_high_3 (Length: 237)
Name: NF18029_high_3
Description: NF18029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18029_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40444371 - 40444153
Alignment:
| Q |
1 |
ataaagtgatggtccgtgtgtacctatcaatgtattttaattttaagataaaaataaacattaaaatttcacatgatatcaatgactctcatgaatcaac |
100 |
Q |
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| T |
40444371 |
ataaagtaatggtccgtgtgtacctatcaatgtattttaattttaagataaaaataaacattaaaatttcacatgatatcaatgactc--atgaatcaac |
40444274 |
T |
|
| Q |
101 |
tggttttattacaacaaattctacaacagacaggaagtaaatcctattacaatcagaacaacagtaagtgccggagcctgcaacaaagtaggtaaaacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40444273 |
tggttttattacaacaaattctacaacagacaggaagtaaatcctattacaatcagaacaacagtaagtgccggagcctgcaacaaagtaggtaaaacag |
40444174 |
T |
|
| Q |
201 |
aagtaatatagaacacataag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
40444173 |
aagtaatatagaacacataag |
40444153 |
T |
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