View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18029_low_1 (Length: 704)
Name: NF18029_low_1
Description: NF18029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18029_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 6 - 686
Target Start/End: Original strand, 29321363 - 29322043
Alignment:
| Q |
6 |
tgaacaagaagaccccatggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacga |
105 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29321363 |
tgaacaagaagaccccaaggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacga |
29321462 |
T |
|
| Q |
106 |
caacatgttcacagcaaccgtcactacccttctcacttcctcatgagaaagattttttatccaacttcccatctccttcaagttctctgaaccaacatct |
205 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
29321463 |
caacatgttcacagcaaccgtaactacccttctcacttcctcatgagaaagattttttatcaaacttcccatctccttcaagttcgctgaaccaacatct |
29321562 |
T |
|
| Q |
206 |
ttgatcacacaaaccgcataaaatttaagttcttcgctcacatcttctacctccgttactcgaatcatgcaccaaaacacttcaccaagtttccctttaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29321563 |
ttgatcacacaaaccgcataaaatttaagttcttcgctcacatcttctacctctgttactcgaatcatgcaccaaaacacttcaccaagtttccccttaa |
29321662 |
T |
|
| Q |
306 |
agatatttccatcatccagcttagctaaatcccataaacgtttaatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29321663 |
agatatttccatcatccagcttagctaaatcccataaacgtttaatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaat |
29321762 |
T |
|
| Q |
406 |
cggcaagagaatatcgtatacgtctgttctctgaagatccttcgacaatagcatcaacgaaagtgatgcattgaatgccaatgcattcaattcctgatcc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
29321763 |
cggcaagagaatatcgtatacgtctgttctctgaagatccttcgacaataacatcaacgaaagtgatgcagtgaatgccaatgctttcaattcctgatcc |
29321862 |
T |
|
| Q |
506 |
atcgagttaatcaaatttgagatgtttgagaatacgagatcaaggttcccttgattcagccagaactctctgttttgaacaacgagtgctgaaaattctg |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |
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| T |
29321863 |
atcgagttaatcaaatttgagatgtttgagaatacgagatcaaggttcccttgattcagccagaactctctgttttgaacaacaagcgctgaaaattccg |
29321962 |
T |
|
| Q |
606 |
ttaacaacaaaagccccttctttttgttggatctcacgtccccagaaatgcaatcgcaaacatactggagaagctccaccc |
686 |
Q |
| |
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| T |
29321963 |
ttaacaacaaaagccccttctttttgttggatctcacgtccccagaaatgcaatcgcaaacatactggagaagctccaccc |
29322043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 239 - 584
Target Start/End: Original strand, 29304410 - 29304755
Alignment:
| Q |
239 |
tcgctcacatcttctacctccgttactcgaatcatgcaccaaaacacttcaccaagtttccctttaaagatatttccatcatccagcttagctaaatccc |
338 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||| ||| |||| |||| |
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| T |
29304410 |
tcgctcacatcttctacctccgctactcgaatcatgcaccaaaacacttcaccatgtttccccatgaagatacttccatcatccaatttaactaattccc |
29304509 |
T |
|
| Q |
339 |
ataaacgtttaatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgttctctg |
438 |
Q |
| |
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| ||||| ||||||| |||| |||||| |||||||||||| ||||||| ||| |||||||| ||| || |||||||| || | |||| || || || | |
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| T |
29304510 |
acaaacgattaatcctattcaccagaacctcttcttctccgtgttgatcgatgatattcaataaattccgcaagagagaattggatacttcatttttcag |
29304609 |
T |
|
| Q |
439 |
aagatccttcgacaatagcatcaacgaaagtgatgcattgaatgccaatgcattcaattcctgatccatcgagttaatcaaattt-gagatgtttgagaa |
537 |
Q |
| |
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|| ||| || ||||||| ||||| |||| ||||| || | |||||| ||| |||||||||||||||||||| || || |||| || ||| | ||| |
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| T |
29304610 |
aaaatcatttgacaataatatcaatgaaattgatgaatcgtatgccagtgccttcaattcctgatccatcga-agaaacatatttcgaaatgctcaagac |
29304708 |
T |
|
| Q |
538 |
tacgagatcaaggttcccttgattcagccagaactctctgttttgaa |
584 |
Q |
| |
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|||| ||| | ||||||||||||||||||||||||||||| ||||| |
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|
| T |
29304709 |
tacgcgatacaagttcccttgattcagccagaactctctgtcttgaa |
29304755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 236 - 505
Target Start/End: Original strand, 29332784 - 29333056
Alignment:
| Q |
236 |
tcttcgctcacatcttctacctccgttactcgaatcatgcaccaaaacacttcaccaagtttccctttaaagatatttccatcatc---cagcttagcta |
332 |
Q |
| |
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||||||||| || |||||| |||| | | ||||||||||||||||||||||||| | || ||| |||||| ||||||||||| || | || ||| |
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|
| T |
29332784 |
tcttcgctcgcagcttctatctccactgcacgaatcatgcaccaaaacacttcacgatgtacccccgcaaagatctttccatcatcatccaacgtaacta |
29332883 |
T |
|
| Q |
333 |
aatcccataaacgtttaatccgattccccagaatctcttcttctccatgttgattgataatattcaacaaaatcggcaagagaatatcgtatacgtctgt |
432 |
Q |
| |
|
|||| | ||||| |||| || || | ||| || ||||||||| ||||||| || ||||||| |||||||| ||||||| |||| |||| |||| ||||| |
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|
| T |
29332884 |
aatcgcccaaacgcttaaccctatccaccaaaacctcttcttccccatgttcatcgataatactcaacaaattcggcaacagaaaatcgcatacatctgt |
29332983 |
T |
|
| Q |
433 |
tctctgaagatccttcgacaatagcatcaacgaaagtgatgcattgaatgccaatgcattcaattcctgatcc |
505 |
Q |
| |
|
||||| ||| |||| |||||||| ||||||||||| |||||||||| |||||||| | |||||||||| |||| |
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|
| T |
29332984 |
tctcttaagctcctgcgacaataacatcaacgaaattgatgcattgtatgccaatcccttcaattccttatcc |
29333056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 29332602 - 29332707
Alignment:
| Q |
54 |
tacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaacatgttcacagcaaccgtcactacccttctcacttcctcatgaga |
153 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||| |||||||| | |||||| |||||||||| |||| |
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|
| T |
29332602 |
tacaattcttatcatccacatcataccaaagaggatcatcaataacacacgatagcatcttcatagcaaccgcaaataccctcttcacttcctccagaga |
29332701 |
T |
|
| Q |
154 |
aagatt |
159 |
Q |
| |
|
|||||| |
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|
| T |
29332702 |
aagatt |
29332707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 29304198 - 29304303
Alignment:
| Q |
9 |
acaagaagaccccatggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataacacacgacaa |
108 |
Q |
| |
|
|||||||||||||| | || |||||||| ||| |||||||||| || ||||| || || ||||||||||||||||||||||||| || ||||||||| |
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|
| T |
29304198 |
acaagaagaccccacgataataagcatctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaatacacgacaa |
29304297 |
T |
|
| Q |
109 |
catgtt |
114 |
Q |
| |
|
|||||| |
|
|
| T |
29304298 |
catgtt |
29304303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 29295155 - 29295194
Alignment:
| Q |
54 |
tacaattcttatcatcaacatcataccaaagaggatcatc |
93 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29295155 |
tacaattcttatcatcaacatcataccaaacaggatcatc |
29295194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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