View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18029_low_3 (Length: 333)
Name: NF18029_low_3
Description: NF18029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18029_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 30416355 - 30416034
Alignment:
| Q |
1 |
atacatattatgcattaaattgaagtgtttggtgatgtatcaaatgattataaaattttatgacaatttgtagacttgtgtttacttaaaaagaactttt |
100 |
Q |
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| T |
30416355 |
atacatattatgcattaaattgaagtgtttggtgatgtatcaaatgattataaaattttatgacaatttgtagacttgtgtttacttaaaaagaactttt |
30416256 |
T |
|
| Q |
101 |
agcttgatgactagattgttaatgttttacgtatacaaaaagctattaaatatactaatttcaacaagaattactcctggagtaagcagatgttcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30416255 |
agcttgatgactagattgttaatgttttacgtatacaaaaagctattaaatatactaatttcaacaagaattactcctggagtaagcagatgttcaatat |
30416156 |
T |
|
| Q |
201 |
gatatctaattattggttaatgttttttgatttatttatgtgtgtgacagtctgagtgtgtttatgtatttaatgcagcagtttaaaatcgatcaatcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30416155 |
gatatctaattattggttaatgttttttgatttatttatgtgtgtgacagtctgagtgtgtttatgtatttaatgcagcagtttaaaatcgatcaatcta |
30416056 |
T |
|
| Q |
301 |
aaactgtagtgtaacctttgat |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
30416055 |
aaactgtagtgtaacctttgat |
30416034 |
T |
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