View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18029_low_4 (Length: 332)
Name: NF18029_low_4
Description: NF18029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18029_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 47 - 316
Target Start/End: Complemental strand, 33885284 - 33885015
Alignment:
| Q |
47 |
ttcttctgtatctcccatttagagcaacaacaagaagaggccaccccatcaatgcgttcatcaaggtatctatagataacacataaaacagcatcaagaa |
146 |
Q |
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| T |
33885284 |
ttcttctgtctctcccatttagagcaacaacaagaagaggccaccccatcaatgcgttcatcaaggtatctatagataacacataaaacagcatcaagaa |
33885185 |
T |
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| Q |
147 |
gatcaaagatgaggaaaacattgtaacatattattgagttgaacactctaatacaattgttaatccannnnnnnggtgagcaggaggaagaaactgcaag |
246 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33885184 |
gatcaaagatgaggaaaacaatgtaacatattattgagttgaacactctaatacaattgttaatccatttttttggtgagcaggaggaagaaactgcaag |
33885085 |
T |
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| Q |
247 |
agacattgagtggtattggtgttgagttgaaaccagattctagttttcattaatgaatgaacatgttatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33885084 |
agacattgagtggtattggtgttgagttgaaaccagattctagttttcattaatgaatgaacatgttatt |
33885015 |
T |
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