View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18029_low_5 (Length: 248)
Name: NF18029_low_5
Description: NF18029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18029_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 54473639 - 54473402
Alignment:
| Q |
1 |
caattttaagccttgtggcccaatccatcacaggtcgaccctttcctgcaaaaaattaatattacatacaagagtgtcaaattaaatccaacaaacaagt |
100 |
Q |
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| T |
54473639 |
caattttaagccttgtggcccaatccatcacaggtcgaccctttcctgcaaaaaattaatattacatacaagagtgtcaaattaaatccaacaaacaagt |
54473540 |
T |
|
| Q |
101 |
aatattaattatagtttgaaagatagcttaccatgaaggtgataatcaagggtcttgttgggaacaaattcataaacaagaagctttttagattcagaaa |
200 |
Q |
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| T |
54473539 |
aatattaattatagtttgaaagatagcttaccatgaaggtgataatcaagggtcttgttgggaacgaattcataaacaagaagctttttagattcagaaa |
54473440 |
T |
|
| Q |
201 |
tgcaatagccaacaagcgagacaagatagcgatgatgt |
238 |
Q |
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| T |
54473439 |
tgcaatagccaacaagcgagacaagatagcgatgatgt |
54473402 |
T |
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