View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18029_low_6 (Length: 248)
Name: NF18029_low_6
Description: NF18029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18029_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 40444536 - 40444781
Alignment:
| Q |
1 |
ttagcttcaccagcttccaaaggaaaattcaatatggctttctgacccctcattctgaaagctgcacaatcataagccttagcagcatcaatctctctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40444536 |
ttagcttcaccagcttccaaaggaaaattcaatatggctttctgacccctcattctgaaagctgcacaatcataagccttagcagcatcaatctctctgt |
40444635 |
T |
|
| Q |
101 |
caaatgttcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttccccatggccttctccttactcctctgtaatgccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40444636 |
caaatgttcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttccccatggccttctccttactcctctgtaatgcct |
40444735 |
T |
|
| Q |
201 |
tgttccataacttctttgttccttcctctccaacacctttgcttct |
246 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
40444736 |
tgttccataacttctttgttccttcctctctaacaccattgattct |
40444781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 18653080 - 18652897
Alignment:
| Q |
8 |
caccagcttccaaaggaaaattcaatatggctttctgacccctcattctgaaagctgcacaatcataagccttagcagcatcaatctctctgtcaaatgt |
107 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| || ||||||||||| || | ||||||||| |
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| T |
18653080 |
caccagcttccaaaggaaaattcaatatagctttctgacccctcattctgaaagcagcagaatcataagcttttgcagcatcaatttcacagtcaaatgt |
18652981 |
T |
|
| Q |
108 |
tcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttccccatggccttctccttactcctct |
191 |
Q |
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| T |
18652980 |
acctaaccaaaccctacttcctttccttgatggatcccttatctcagctgcaaatttcccccatggccttctccttacacctct |
18652897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 30641782 - 30641730
Alignment:
| Q |
127 |
cctttccttgtcggatcacgaatttctgcagcatattttccccatggccttct |
179 |
Q |
| |
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||||||||||| || |||||||||||||| ||| ||||||||||||| ||||| |
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| T |
30641782 |
cctttccttgttgggtcacgaatttctgctgcaaattttccccatggtcttct |
30641730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 30710538 - 30710608
Alignment:
| Q |
100 |
tcaaatgttcctaaccaaaccctgcttcctttccttgtcggatcacgaatttctgcagcatattttcccca |
170 |
Q |
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| T |
30710538 |
tcaaatgttcctagccaaacccttcttcctcctcttgttgtatctctgatttctgcagcatattttcccca |
30710608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 4420232 - 4420282
Alignment:
| Q |
147 |
aatttctgcagcatattttccccatggccttctccttactcctctgtaatg |
197 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4420232 |
aatttcagctgcatattttccccatggccttctccttactcctctataatg |
4420282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 38809697 - 38809651
Alignment:
| Q |
145 |
cgaatttctgcagcatattttccccatggccttctccttactcctct |
191 |
Q |
| |
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||||| ||||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
38809697 |
cgaatctctgctgcacattttccccatggccttatccttactcctct |
38809651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 38822646 - 38822600
Alignment:
| Q |
145 |
cgaatttctgcagcatattttccccatggccttctccttactcctct |
191 |
Q |
| |
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||||| ||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
38822646 |
cgaatctctgcagcaaattttccccatggccttatcctcactcctct |
38822600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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