View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1802_high_1 (Length: 674)

Name: NF1802_high_1
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1802_high_1
NF1802_high_1
[»] chr1 (25 HSPs)
chr1 (19-663)||(47720704-47721348)
chr1 (19-663)||(47727696-47728340)
chr1 (120-350)||(47754796-47755023)
chr1 (431-663)||(47753589-47753820)
chr1 (160-415)||(47709603-47709855)
chr1 (19-97)||(47714122-47714200)
chr1 (441-537)||(19528308-19528403)
chr1 (483-538)||(11068865-11068920)
chr1 (458-537)||(51814494-51814572)
chr1 (458-539)||(51703777-51703857)
chr1 (471-539)||(11438494-11438562)
chr1 (456-516)||(52029933-52029992)
chr1 (467-537)||(521218-521288)
chr1 (467-541)||(52116787-52116861)
chr1 (458-539)||(44961763-44961843)
chr1 (467-538)||(9165201-9165272)
chr1 (467-530)||(12662289-12662352)
chr1 (458-516)||(2799883-2799940)
chr1 (597-663)||(47709491-47709557)
chr1 (467-516)||(30420331-30420380)
chr1 (363-412)||(47753844-47753892)
chr1 (458-514)||(8904437-8904492)
chr1 (458-514)||(15786318-15786373)
chr1 (453-537)||(16169971-16170054)
chr1 (458-514)||(41881482-41881537)
[»] chr8 (11 HSPs)
chr8 (467-540)||(23361655-23361728)
chr8 (458-537)||(35641899-35641977)
chr8 (424-530)||(36205202-36205307)
chr8 (470-527)||(4435985-4436042)
chr8 (467-516)||(30483890-30483939)
chr8 (466-539)||(29376472-29376543)
chr8 (467-516)||(6536541-6536590)
chr8 (467-539)||(11819774-11819846)
chr8 (455-495)||(19703482-19703521)
chr8 (424-538)||(27750729-27750844)
chr8 (457-537)||(28783060-28783139)
[»] chr7 (16 HSPs)
chr7 (456-540)||(22760860-22760943)
chr7 (467-538)||(15137552-15137623)
chr7 (469-530)||(23595736-23595797)
chr7 (467-516)||(41519270-41519319)
chr7 (455-540)||(43590904-43590988)
chr7 (429-516)||(8108602-8108688)
chr7 (467-537)||(25590611-25590681)
chr7 (466-538)||(5579239-5579311)
chr7 (466-538)||(18363695-18363767)
chr7 (458-537)||(43215184-43215262)
chr7 (469-535)||(21854550-21854616)
chr7 (467-537)||(26526290-26526360)
chr7 (467-496)||(9183197-9183226)
chr7 (456-537)||(18056771-18056851)
chr7 (458-538)||(26459408-26459487)
chr7 (456-512)||(29916804-29916859)
[»] chr5 (8 HSPs)
chr5 (466-537)||(29692391-29692462)
chr5 (470-540)||(14495814-14495884)
chr5 (458-530)||(1410658-1410728)
chr5 (467-537)||(40461619-40461689)
chr5 (458-537)||(16773807-16773885)
chr5 (458-537)||(36958120-36958198)
chr5 (453-516)||(43442217-43442279)
chr5 (467-539)||(19949622-19949693)
[»] chr2 (18 HSPs)
chr2 (467-538)||(13803494-13803565)
chr2 (458-513)||(6859310-6859364)
chr2 (478-537)||(35916086-35916145)
chr2 (467-538)||(41202249-41202320)
chr2 (456-537)||(19016031-19016111)
chr2 (478-534)||(4881708-4881764)
chr2 (458-538)||(5147677-5147756)
chr2 (481-516)||(3001400-3001435)
chr2 (458-537)||(19244109-19244187)
chr2 (467-538)||(28846690-28846761)
chr2 (467-533)||(2144449-2144515)
chr2 (466-528)||(5952169-5952231)
chr2 (467-516)||(9577857-9577906)
chr2 (467-536)||(23465927-23465996)
chr2 (456-537)||(37480075-37480155)
chr2 (456-537)||(39714992-39715072)
chr2 (456-496)||(29503312-29503351)
chr2 (456-496)||(31681090-31681129)
[»] chr4 (16 HSPs)
chr4 (467-539)||(43728393-43728465)
chr4 (470-539)||(31759667-31759736)
chr4 (471-530)||(21660154-21660213)
chr4 (471-530)||(21668918-21668977)
chr4 (473-516)||(25869589-25869632)
chr4 (456-539)||(46295095-46295177)
chr4 (470-537)||(48480835-48480902)
chr4 (483-538)||(56236937-56236992)
chr4 (456-538)||(5795405-5795486)
chr4 (458-496)||(7292796-7292833)
chr4 (458-540)||(37109349-37109430)
chr4 (467-537)||(51948480-51948550)
chr4 (456-537)||(20608922-20609002)
chr4 (467-516)||(38869789-38869838)
chr4 (456-537)||(39509070-39509150)
chr4 (471-539)||(47230514-47230582)
[»] chr3 (18 HSPs)
chr3 (454-537)||(17108892-17108974)
chr3 (469-533)||(4844519-4844583)
chr3 (469-533)||(4870215-4870279)
chr3 (455-539)||(14339608-14339691)
chr3 (456-536)||(47454613-47454692)
chr3 (458-537)||(36720381-36720459)
chr3 (467-512)||(8501579-8501624)
chr3 (467-537)||(2597226-2597296)
chr3 (458-516)||(4222162-4222219)
chr3 (467-537)||(5499413-5499483)
chr3 (458-516)||(37788463-37788520)
chr3 (466-516)||(44069779-44069829)
chr3 (454-516)||(49494140-49494201)
chr3 (467-540)||(10682950-10683022)
chr3 (478-539)||(19341799-19341860)
chr3 (458-498)||(47860795-47860833)
chr3 (458-522)||(29563915-29563978)
chr3 (458-538)||(51903876-51903955)
[»] chr6 (7 HSPs)
chr6 (474-534)||(8268641-8268701)
chr6 (458-537)||(33549104-33549182)
chr6 (483-537)||(9876974-9877028)
chr6 (467-516)||(10338180-10338229)
chr6 (480-537)||(24641209-24641266)
chr6 (467-539)||(30127398-30127470)
chr6 (454-530)||(34444810-34444885)
[»] scaffold0194 (1 HSPs)
scaffold0194 (458-516)||(13044-13101)
[»] scaffold0291 (1 HSPs)
scaffold0291 (456-537)||(2466-2546)
[»] scaffold0361 (1 HSPs)
scaffold0361 (470-537)||(5233-5299)
[»] scaffold0258 (1 HSPs)
scaffold0258 (458-537)||(15321-15399)
[»] scaffold0021 (1 HSPs)
scaffold0021 (480-530)||(157006-157056)
[»] scaffold0122 (1 HSPs)
scaffold0122 (467-496)||(6925-6954)


Alignment Details
Target: chr1 (Bit Score: 592; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 19 - 663
Target Start/End: Complemental strand, 47721348 - 47720704
Alignment:
Q  19 agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47721348 agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat 47721249  T
Q  119 ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47721248 ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa 47721149  T
Q  219 gtcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga 318  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47721148 gtcttggaaaaccacaactttagttgtgtttctaatactgcgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga 47721049  T
Q  319 cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaannn 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  47721048 cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaattt 47720949  T
Q  419 nnnnaaagatgctaaattaattcatccaaattgcacagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagc 518  Q
        ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  47720948 ttttaaagaagctaaattaattcatccaaattgcacagggagaatcaaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccacc 47720849  T
Q  519 agatcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatca 618  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47720848 agatcaacccaaatggattaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatca 47720749  T
Q  619 ggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcat 663  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  47720748 ggttacattgtaagtgcaagtaacgtccaccttgtcgagcttcat 47720704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 19 - 663
Target Start/End: Complemental strand, 47728340 - 47727696
Alignment:
Q  19 agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47728340 agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaataccccacctgcaataccccaccat 47728241  T
Q  119 ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47728240 ggacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaa 47728141  T
Q  219 gtcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga 318  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47728140 gtcttggaaaaccacaactttagttgtgtttctaatactgcgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatga 47728041  T
Q  319 cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaannn 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  47728040 cttgcttttctagttcaccgaatacaagtcttatggacaaataggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaattt 47727941  T
Q  419 nnnnaaagatgctaaattaattcatccaaattgcacagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagc 518  Q
        ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  47727940 ttttaaagaagctaaattaattcatccaaattgcacagggagaatcaaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccacc 47727841  T
Q  519 agatcaacccaaatgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatca 618  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47727840 agatcaacccaaatggattaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatca 47727741  T
Q  619 ggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcat 663  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  47727740 ggttacattgtaagtgcaagtaacgtccaccttgtcgagcttcat 47727696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 120 - 350
Target Start/End: Complemental strand, 47755023 - 47754796
Alignment:
Q  120 gacttatcttttttatctgagtttgatcctttcgaaagttaggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaag 219  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  47755023 gacttatcttttttacatgagtttgatcctttcgaaagttaggttcaggcaaaggctcacttcacataataccaacatcttcgttgatgaggcgtggaag 47754924  T
Q  220 tcttggaaaaccacaactctagttgtgtttctaatactacgatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatgac 319  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||   ||    
T  47754923 tcttggaaaaccacaagtctaattgtgtttctaatactacgatctcgtcttatcatcttacaatggaagctaacaacatgtgtgttgctcataac---ac 47754827  T
Q  320 ttgcttttctagttcaccgaatacaagtctt 350  Q
    |||||||||| ||||||||||||||||||||    
T  47754826 ttgcttttctggttcaccgaatacaagtctt 47754796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 431 - 663
Target Start/End: Complemental strand, 47753820 - 47753589
Alignment:
Q  431 taaattaattcatccaaattgcacagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||| ||| ||||||||||| | ||| |||||| ||    
T  47753820 taaattaattcatccaaattgcagagggagaatcaaaacctgagaccttgaggaggagcacagtcctagatcccaagtcaatacgaccaggtcaacctaa 47753721  T
Q  531 atgggttaatgttgatgacaattgtttaagcaaccctattaaaactataattggaagcttacttgagtcttggatctcaaatttatcaggttacattgta 630  Q
    |||||||||| | |||||||||||||||||||||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||  |    
T  47753720 atgggttaatatcgatgacaattgtttaagcaaccctattacagctatatttggaggcttactttagtcttggatctcaaatttatcaggttacattaca 47753621  T
Q  631 agtgcaagcaacgtccaccttgtcgagcttcat 663  Q
    ||||| ||  | || ||||||||||||||||||    
T  47753620 agtgccag-tatgttcaccttgtcgagcttcat 47753589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 160 - 415
Target Start/End: Complemental strand, 47709855 - 47709603
Alignment:
Q  160 aggttcaggcaagggctcacttcacataatgccaacatcttcgttgatgaggtgtggaagtcttggaaaaccacaactctagttgtgtttctaatactac 259  Q
    ||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  47709855 aggttcaagcaaaggctcacttcacataatgctaacatcttcgatgatgaggtgtggtggtcttggaaaaccacaaatctagttgtgtttctaatactac 47709756  T
Q  260 gatcttgtcttatcatcttacaatggaagctaacaacatgtgtgttattcataacatgacttgcttttctagttcaccgaatacaagtcttatggacaaa 359  Q
    || |  ||||||||||||||| ||||||||| ||||| | ||||| | |  ||||    ||||||| ||||||||| ||   ||||||| | | ||||||    
T  47709755 gaacccgtcttatcatcttactatggaagctcacaacttctgtgtaactgttaac---tcttgcttctctagttcatcggcaacaagtcatctcgacaaa 47709659  T
Q  360 taggtttaatcaaattcttctcatcacaattgcatcattaataattttgatgacaa 415  Q
    | |||| |||  ||||||||| ||||||||||| |||||  |||| ||||||||||    
T  47709658 tgggttcaatggaattcttctaatcacaattgcgtcattcttaatgttgatgacaa 47709603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 47714200 - 47714122
Alignment:
Q  19 agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaatacc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47714200 agggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatattatgatctcttcaatacc 47714122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 441 - 537
Target Start/End: Original strand, 19528308 - 19528403
Alignment:
Q  441 catccaaattgcacagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||  | |||||||||||| |||||||| |||||||||||||||||| || ||| |||| |||||||| |||  |||||||| ||||||    
T  19528308 catccaaattgaccggggagaatcgaa-cctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 11068865 - 11068920
Alignment:
Q  483 gaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||    
T  11068865 gaggagcacactcctggatcccaagtcaataccaccagatcaacccaaatgggtta 11068920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 51814572 - 51814494
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| ||||||||||||||||||  | ||||||||||||||||| |||  |||||||| ||||||    
T  51814572 gagaatcgaa-cctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 539
Target Start/End: Complemental strand, 51703857 - 51703777
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||| ||||| |||||||||||||||||||||| | ||  |||| ||||||||  ||| |||||||||||||||||    
T  51703857 gagaatcgaa-cctgaaactttgaggaggagcacactcccagattccaagccaataccactagaccaacccaaatgggttaa 51703777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 539
Target Start/End: Original strand, 11438494 - 11438562
Alignment:
Q  471 tgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    ||||||||||||||||| ||||||| || ||| ||||||||||||| |||| |||| ||| ||||||||    
T  11438494 tgagactttgaggaggatcacactcttaaatcgcaagtcaataccatcagaccaactcaagtgggttaa 11438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 516
Target Start/End: Original strand, 52029933 - 52029992
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||||| |||||||| ||||| |||||||||||||||  ||||||||||||||||    
T  52029933 gggagaatcgaa-cctgagaccttgagaaggagcacactcctaggtctcaagtcaatacca 52029992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 521288 - 521218
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||||||||| ||||||||||||| || | |||||||||||||| ||| || |||| |||| ||||||    
T  521288 aacctgagactttaaggaggagcacacccccaaatctcaagtcaatatcagtaggtcaatccaagtgggtt 521218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 541
Target Start/End: Original strand, 52116787 - 52116861
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaatg 541  Q
    |||||||||| ||||||||||||||||||| |  || |||| |||||||| |||  |||||||| ||||||||||    
T  52116787 aacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggttaatg 52116861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 539
Target Start/End: Complemental strand, 44961843 - 44961763
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||| ||||||||  ||||||||||||||||| || ||||||||  ||||||| | || |||||||| ||||||||    
T  44961843 gagaatcgaa-cctgagaccctgaggaggagcacactcttaaatctcaagctaataccacctgaccaacccaagtgggttaa 44961763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 538
Target Start/End: Original strand, 9165201 - 9165272
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||||||||||||||||||||||| |  || |||| ||||||||  ||  |||||||| |||||||    
T  9165201 aacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtta 9165272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 530
Target Start/End: Complemental strand, 12662352 - 12662289
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    |||||||||| | ||||||||||||||| |  |||| ||||||||||||| |||| ||||||||    
T  12662352 aacctgagacatcgaggaggagcacacttccgtatcacaagtcaataccatcagaccaacccaa 12662289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 2799940 - 2799883
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| |||||||| ||||||||||||||||||| | |||||||| | ||||||    
T  2799940 gagaatcgaa-cctgagaccttgaggaggagcacactcccagatctcaagcctatacca 2799883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 663
Target Start/End: Complemental strand, 47709557 - 47709491
Alignment:
Q  597 gtcttggatctcaaatttatcaggttacattgtaagtgcaagcaacgtccaccttgtcgagcttcat 663  Q
    ||||||||||||||||||||||  |||||||| | ||||||  || |||| |||||| |||||||||    
T  47709557 gtcttggatctcaaatttatcaacttacattgcaggtgcaattaaagtcctccttgttgagcttcat 47709491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 30420380 - 30420331
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||  ||||||||||||||||||||||||| |||| ||| ||||    
T  30420380 aacctgagatgttgaggaggagcacactcctatatcccaagccaaaacca 30420331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 47753892 - 47753844
Alignment:
Q  363 gtttaatcaaattcttctcatcacaattgcatcattaataattttgatga 412  Q
    ||||||||||||||||||| |||||||||| |||||| |||| |||||||    
T  47753892 gtttaatcaaattcttctcttcacaattgc-tcattattaatgttgatga 47753844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 514
Target Start/End: Complemental strand, 8904492 - 8904437
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatac 514  Q
    |||||||||| | |||||| ||||||||||||||||||  ||||| |||||||||||    
T  8904492 gagaatcgaa-cttgagaccttgaggaggagcacactcacatatcccaagtcaatac 8904437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 15786318 - 15786373
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatac 514  Q
    |||||||||| |||||||| ||||||||||||||||||| | ||| |||| ||||||    
T  15786318 gagaatcgaa-cctgagaccttgaggaggagcacactcccagatcccaagccaatac 15786373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 537
Target Start/End: Original strand, 16169971 - 16170054
Alignment:
Q  453 acagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||||||||||| ||||| || |||||||||| |||||||| |  || ||||||||||||| |||   ||||||| ||||||    
T  16169971 acagggagaatcgaa-cctgaaaccttgaggaggaacacactcccaggtcccaagtcaataccaccaggctaacccaagtgggtt 16170054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 514
Target Start/End: Complemental strand, 41881537 - 41881482
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatac 514  Q
    |||||||||||  |||||| |||| |||||||| ||||| |||||||||||||||||    
T  41881537 gagaatcgaaat-tgagaccttgaagaggagcatactccaatatctcaagtcaatac 41881482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 467 - 540
Target Start/End: Original strand, 23361655 - 23361728
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaat 540  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||| |||||||||    
T  23361655 aacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaacccaagtgggttaat 23361728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 537
Target Start/End: Original strand, 35641899 - 35641977
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| | ||||||||||||||||| | |||||||| | |||||| |||| |||||||| ||||||    
T  35641899 gagaatcgaa-cctgagacatcgaggaggagcacactcccaaatctcaagccgataccaccagaccaacccaagtgggtt 35641977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 530
Target Start/End: Complemental strand, 36205307 - 36205202
Alignment:
Q  424 aagatgctaaattaattcatccaaattgcacagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatc 523  Q
    |||| ||||||||| | |||| ||||||  | |||||||||||| | |||||| ||||||||||||||||||| | |||||||  ||||| || |||| |    
T  36205307 aagaagctaaattagtccatctaaattgaccggggagaatcgaa-catgagaccttgaggaggagcacactcccagatctcaaaccaataacatcagacc 36205209  T
Q  524 aacccaa 530  Q
    |||||||    
T  36205208 aacccaa 36205202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 4436042 - 4435985
Alignment:
Q  470 ctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacc 527  Q
    ||||||| |||||||||||||| |||| || ||||||| |||||||||||| ||||||    
T  4436042 ctgagaccttgaggaggagcactctcccatgtctcaagccaataccagcaggtcaacc 4435985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 30483890 - 30483939
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    ||||||||||| |||||||||||||||||| ||||| |||| ||||||||    
T  30483890 aacctgagactctgaggaggagcacactcccatatcccaagccaatacca 30483939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 539
Target Start/End: Complemental strand, 29376543 - 29376472
Alignment:
Q  466 aaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||||||| | ||||||||| |||  | ||| ||||||||||||| ||||| ||||||| ||||||||    
T  29376543 aaacctgagactttaaagaggagcactctc--agatcccaagtcaataccaacagattaacccaagtgggttaa 29376472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 6536590 - 6536541
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| |||||||||||||||||||||  || |||| ||||||||    
T  6536590 aacctgagaccttgaggaggagcacactcctaggtcccaagccaatacca 6536541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 11819846 - 11819774
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||| ||||||||||||||||||| |  || |||| | ||||||  ||  |||||||||||||||||    
T  11819846 aacctgagaccttgaggaggagcacactcccaagtcccaagcctataccactagggcaacccaaatgggttaa 11819774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 455 - 495
Target Start/End: Original strand, 19703482 - 19703521
Alignment:
Q  455 agggagaatcgaaacctgagactttgaggaggagcacactc 495  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  19703482 agggagaatcgaa-cctgagaccttgaggaggagcacactc 19703521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 538
Target Start/End: Complemental strand, 27750844 - 27750729
Alignment:
Q  424 aagatgctaaattaattcatccaaattg-cac-agggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcaga 521  Q
    |||| ||||||||| | ||||||||||| ||| || | |||||||| |||||||| ||||||||||||||||||| |  || |||| | ||||||  ||     
T  27750844 aagaagctaaattagtccatccaaattgacactagagggaatcgaa-cctgagaccttgaggaggagcacactcccaagtcccaagcctataccacgagg 27750746  T
Q  522 tcaacccaaatgggtta 538  Q
     ||||||||||||||||    
T  27750745 gcaacccaaatgggtta 27750729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 537
Target Start/End: Complemental strand, 28783139 - 28783060
Alignment:
Q  457 ggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||||||| | |||||| ||||||||||||||||||| |  ||||||| |||||||| ||   |||||||| ||||||    
T  28783139 ggagaatcgaa-catgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 456 - 540
Target Start/End: Complemental strand, 22760943 - 22760860
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaat 540  Q
    |||||||||||| |||||||| ||||||||||||||||||| |  || ||||||||||||| |||| |||||||| |||||||||    
T  22760943 gggagaatcgaa-cctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggttaat 22760860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 15137623 - 15137552
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||| ||||| |||  |||||||| |||||||    
T  15137623 aacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaacccaagtgggtta 15137552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 23595797 - 23595736
Alignment:
Q  469 cctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    ||||| || ||||||||||||||||||| | ||||||||||||||||| |||| ||||||||    
T  23595797 cctgataccttgaggaggagcacactccgagatctcaagtcaataccaccagaccaacccaa 23595736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 41519270 - 41519319
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  41519270 aacctgagaccttgaggaggagcacactcctaaatcccaagtcaatacca 41519319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 455 - 540
Target Start/End: Complemental strand, 43590988 - 43590904
Alignment:
Q  455 agggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaat 540  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |  || |||| |||||||| |||  |||||||| |||||||||    
T  43590988 agggagaatcgaa-cctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggccaacccaactgggttaat 43590904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 516
Target Start/End: Complemental strand, 8108688 - 8108602
Alignment:
Q  429 gctaaattaattcatccaaattgcacagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| ||||||||||||  |||  ||||||||| |||||||| |  ||||||||| |||||| ||||| |||||||||||||    
T  8108688 gctaaattaactcatccaaattgaccagacagaatcgaa-cctgagacctcaaggaggagcgcactcccatatcccaagtcaatacca 8108602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 25590681 - 25590611
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||| ||||| | ||||||||||||||||| | |||||||| |||||||| ||| ||||||||| ||||||    
T  25590681 aacccgagacctcgaggaggagcacactcccagatctcaagccaataccaacaggtcaacccaagtgggtt 25590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 538
Target Start/End: Original strand, 5579239 - 5579311
Alignment:
Q  466 aaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    ||||||||||| ||||||||||||||||||| |  || |||| ||| |||| ||| ||||||||| |||||||    
T  5579239 aaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaacccaagtgggtta 5579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 538
Target Start/End: Complemental strand, 18363767 - 18363695
Alignment:
Q  466 aaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    ||||||||||| ||||||||||||||||||| | |||||||| | ||||||  ||  |||||||| |||||||    
T  18363767 aaacctgagaccttgaggaggagcacactcccaaatctcaagcctataccactaggccaacccaagtgggtta 18363695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 43215262 - 43215184
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| ||||||||||||||||||| |  || |||| ||||||||  ||| |||||||| ||||||    
T  43215262 gagaatcgaa-cctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 535
Target Start/End: Complemental strand, 21854616 - 21854550
Alignment:
Q  469 cctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatggg 535  Q
    |||||||||||||||||||||||||||| | ||| | || |||||||| |||  |||||||| ||||    
T  21854616 cctgagactttgaggaggagcacactcccagatccctagccaataccatcaggccaacccaagtggg 21854550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 26526360 - 26526290
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||| |||| |||||||||||||||||||  | |||  |||||||||||| |||| ||| |||||||||||    
T  26526360 aacccgagattttgaggaggagcacactctcaaatcctaagtcaataccaccagaccaatccaaatgggtt 26526290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 9183197 - 9183226
Alignment:
Q  467 aacctgagactttgaggaggagcacactcc 496  Q
    ||||||||||||||||||||||||||||||    
T  9183197 aacctgagactttgaggaggagcacactcc 9183226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Original strand, 18056771 - 18056851
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||| |||||||| || |||||||||||||||| |   | ||||||||||||| ||||  ||||||| ||||||    
T  18056771 gggagaatcgaa-cctgagaccttcaggaggagcacactccgaagacccaagtcaataccaccagactaacccaagtgggtt 18056851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 538
Target Start/End: Original strand, 26459408 - 26459487
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||| |||||||| ||||||||||||||||||| |  || |||| ||||||||  ||  |||||||| |||||||    
T  26459408 gagaatcgaa-cctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtta 26459487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 512
Target Start/End: Original strand, 29916804 - 29916859
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaat 512  Q
    |||||||||||| |||||||| |||||||||||||||||| || ||| || ||||||    
T  29916804 gggagaatcgaa-cctgagaccttgaggaggagcacactcttagatcccacgtcaat 29916859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 466 - 537
Target Start/End: Original strand, 29692391 - 29692462
Alignment:
Q  466 aaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||||||||||||||||||||||||||| | ||| |||  |||||||| |||| |||||||||||||||    
T  29692391 aaacctgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaatgggtt 29692462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 14495814 - 14495884
Alignment:
Q  470 ctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaat 540  Q
    ||||||| | ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||||||||||    
T  14495814 ctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggttaat 14495884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 530
Target Start/End: Original strand, 1410658 - 1410728
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    ||||||||||  ||||||| | ||||||||||||||||| ||||| ||||||||||||| |||| ||||||||    
T  1410658 gagaatcgaa--ctgagacctcgaggaggagcacactcccatatcccaagtcaataccaccagaccaacccaa 1410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 537
Target Start/End: Original strand, 40461619 - 40461689
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| |||||||||  |  |||||||| ||||||| ||||||||||||| ||||||    
T  40461619 aacctgagaccttgaggagaagcacactctcaagtctcaagttaataccaccagatcaacccaagtgggtt 40461689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 16773885 - 16773807
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| | ||||||||||||||||| |  || ||||||||||||| |||| |||| ||| ||||||    
T  16773885 gagaatcgaa-cctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggtt 16773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 537
Target Start/End: Original strand, 36958120 - 36958198
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||||| || ||||| |||||||| | |||||||| |||| ||| || |||||||||| ||||||    
T  36958120 gagaatcgaa-cctgagacttcgatgaggaacacactcccaaatctcaagccaatcccaccatatcaacccaagtgggtt 36958198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 453 - 516
Target Start/End: Complemental strand, 43442279 - 43442217
Alignment:
Q  453 acagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||| |||||||||| |||||||| ||||||||||||||||||| | |||||||  ||||||||    
T  43442279 acagagagaatcgaa-cctgagaccttgaggaggagcacactcccagatctcaaaccaatacca 43442217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 19949622 - 19949693
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||  | |||||||||||||||| || ||||||||||||||||| ||  ||||||||| | ||||||    
T  19949622 aacctgagagctcgaggaggagcacactc-tagatctcaagtcaataccaccaagtcaacccaagtaggttaa 19949693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 13803565 - 13803494
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||| |||||||||||||||||||||  ||||||| ||||| ||  ||||||||||||||||||||    
T  13803565 aacctgagaccttgaggaggagcacactcctaagtctcaagccaatatcactagatcaacccaaatgggtta 13803494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 513
Target Start/End: Original strand, 6859310 - 6859364
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaata 513  Q
    |||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||    
T  6859310 gagaatcgaa-cctgagactttgaagaggagcacactcccatatcacaagtcaata 6859364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 35916145 - 35916086
Alignment:
Q  478 ttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| ||||||| || ||||||||||||||||| |||| |||||||| ||||||    
T  35916145 ttgaggaggaacacactcttaaatctcaagtcaataccaccagaccaacccaagtgggtt 35916086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 41202320 - 41202249
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    ||||| |||||| ||||||||||| ||||| | |||||| |||||||||| |||| |||||||||| |||||    
T  41202320 aacctaagacttcgaggaggagcatactcccagatctcaggtcaataccaccagaccaacccaaataggtta 41202249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 19016111 - 19016031
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||||| |||| |||||| | ||||||||||||||||| |  ||||||| |||||||| |||| |||||||| ||||||    
T  19016111 gggagaatc-aaacttgagacctcgaggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 534
Target Start/End: Complemental strand, 4881764 - 4881708
Alignment:
Q  478 ttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgg 534  Q
    ||||||||||| ||||||| |  |||||||||||||||| | |||||||||||||||    
T  4881764 ttgaggaggagaacactcccaagtctcaagtcaataccaccggatcaacccaaatgg 4881708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 538
Target Start/End: Original strand, 5147677 - 5147756
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||| || ||||| ||||| ||||||| ||||| | |||||||||||||||||  ||| |||||||| |||||||    
T  5147677 gagaatcgaatcc-gagaccttgagaaggagcatactcccagatctcaagtcaataccactagaccaacccaagtgggtta 5147756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 516
Target Start/End: Complemental strand, 3001435 - 3001400
Alignment:
Q  481 aggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||||||||||| |||||||||||||||||    
T  3001435 aggaggagcacactcctagatctcaagtcaatacca 3001400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 19244187 - 19244109
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| ||| ||||||||||||||  |  || |||||||||||||| ||| |||||||| ||||||    
T  19244187 gagaatcgaa-cctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 538
Target Start/End: Complemental strand, 28846761 - 28846690
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||| | ||||||||||||||||| |  || |||||||||||||  ||||||||| || |||||||    
T  28846761 aacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactagatcaacctaagtgggtta 28846690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 533
Target Start/End: Complemental strand, 2144515 - 2144449
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatg 533  Q
    ||||||| || ||| ||| || |||||||| ||||| |||| |||||||| ||||||||||||||||    
T  2144515 aacctgaaacattgcggaagaacacactcccatatcccaagccaataccaccagatcaacccaaatg 2144449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 528
Target Start/End: Complemental strand, 5952231 - 5952169
Alignment:
Q  466 aaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaaccc 528  Q
    |||||||| ||||| ||||||||| |||||  | |||||||||||||||||  ||||||||||    
T  5952231 aaacctgacactttaaggaggagcccactctcaaatctcaagtcaataccattagatcaaccc 5952169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 9577906 - 9577857
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||  ||||||||||||||||| ||| || ||||||||||||||    
T  9577906 aacctgagatattgaggaggagcacacttctaaatttcaagtcaatacca 9577857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 536
Target Start/End: Original strand, 23465927 - 23465996
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggt 536  Q
    |||||||||||||||||||||||| ||||| | |||  ||  ||||||||  ||| ||||||||||||||    
T  23465927 aacctgagactttgaggaggagcatactcccaaatcctaaaccaataccattagaccaacccaaatgggt 23465996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 37480155 - 37480075
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||| |||||||| ||||||||||||||||||  |  || |||| |||||||| |||  |||||||| ||||||    
T  37480155 gggagaatcgaa-cctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 39715072 - 39714992
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||| |||||||| | ||||||||||||||||| |  || ||||||||||||| ||   |||||||| ||||||    
T  39715072 gggagaatcgaa-cctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtt 39714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 496
Target Start/End: Complemental strand, 29503351 - 29503312
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcc 496  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  29503351 gggagaatcgaa-cctgagaccttgaggaggagcacactcc 29503312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 496
Target Start/End: Complemental strand, 31681129 - 31681090
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcc 496  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  31681129 gggagaatcgaa-cctgagactttgaggagaagcacactcc 31681090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 43728465 - 43728393
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||||||||||||||||||||||| | |||  |||||||||||| || | ||||||||||| |||||    
T  43728465 aacctgagactttgaggaggagcacactcccagatcataagtcaataccaccataccaacccaaatgagttaa 43728393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 31759667 - 31759736
Alignment:
Q  470 ctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    ||||||| ||||||||||||||||||| |  || |||| ||||||||  |||||||||||| ||||||||    
T  31759667 ctgagaccttgaggaggagcacactcccaagtcccaagccaataccactagatcaacccaagtgggttaa 31759736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 530
Target Start/End: Original strand, 21660154 - 21660213
Alignment:
Q  471 tgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    |||||| | ||||| ||||||||||| | ||||||||||||||||| |||| ||||||||    
T  21660154 tgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaa 21660213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 530
Target Start/End: Original strand, 21668918 - 21668977
Alignment:
Q  471 tgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    |||||| | ||||| ||||||||||| | ||||||||||||||||| |||| ||||||||    
T  21668918 tgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagaccaacccaa 21668977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 516
Target Start/End: Original strand, 25869589 - 25869632
Alignment:
Q  473 agactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||||||||||||||||  | |||||||||||||||||    
T  25869589 agactttgaggaggagcacactctcagatctcaagtcaatacca 25869632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 539
Target Start/End: Complemental strand, 46295177 - 46295095
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||||| |||||||| ||||||||||||||||||| || || |||| ||| || | |||| ||||| || ||||||||    
T  46295177 gggagaatcgaa-cctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccagaccaacctaagtgggttaa 46295095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 48480835 - 48480902
Alignment:
Q  470 ctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||| ||||||||||| ||||||| | ||| |||||| |||||| || ||||| |||||||||||    
T  48480835 ctgagaccttgaggaggaggacactccaagatcccaagtctataccatcatatcaatccaaatgggtt 48480902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 56236937 - 56236992
Alignment:
Q  483 gaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||||||| ||||| ||||||||||||| |||| ||||| || |||||||    
T  56236937 gaggagcacactcccatatcccaagtcaataccaccagaccaacctaattgggtta 56236992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 456 - 538
Target Start/End: Original strand, 5795405 - 5795486
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    ||||||||| ||||||||||| ||||||||||||| ||||| |  |  |||||||| |||| |||| |||||||| |||||||    
T  5795405 gggagaatc-aaacctgagaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaacccaagtgggtta 5795486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 496
Target Start/End: Original strand, 7292796 - 7292833
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcc 496  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  7292796 gagaatcgaa-cctgagactttgaggaggagcacactcc 7292833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 37109349 - 37109430
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaat 540  Q
    |||||||||| |||||||| ||||||||||||||||||| |  || |||| ||||||||  ||  |||||||| |||||||||    
T  37109349 gagaatcgaa-cctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttaat 37109430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 537
Target Start/End: Complemental strand, 51948550 - 51948480
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| | ||||||| ||||||||||| ||| ||||||||||| | |||  |||||||| ||||||    
T  51948550 aacctgagacctcgaggaggggcacactcctagatcccaagtcaatactaccaggacaacccaagtgggtt 51948480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 20609002 - 20608922
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||| | |||||| |||| ||| | ||||||||   |||||||| |||||||| ||||||||||||| ||||||    
T  20609002 gggagaatcgaa-cttgagaccttgatgagaaacacactcccggatctcaagccaataccatcagatcaacccaagtgggtt 20608922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 38869838 - 38869789
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| ||||||||||||||||||| | ||| |||| ||||||||    
T  38869838 aacctgagaccttgaggaggagcacactcccagatcccaagccaatacca 38869789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 39509150 - 39509070
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||| |||||||| | ||||||||||||||||| | ||| |||| || |||||  ||| |||||||| ||||||    
T  39509150 gggagaatcgaa-cctgagacctcgaggaggagcacactcccagatcccaagccattaccatgagaccaacccaagtgggtt 39509070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 539
Target Start/End: Complemental strand, 47230582 - 47230514
Alignment:
Q  471 tgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||| || |||||||||||||  || ||||||| || ||||| |||| || ||||||||||||||    
T  47230582 tgagacttcgatgaggagcacactcacatgtctcaagccagtaccaccagaccatcccaaatgggttaa 47230514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 17108892 - 17108974
Alignment:
Q  454 cagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| | ||||| ||||||||||| || |  ||||||| ||||||    
T  17108892 cagggagaatc-aaacctgagaccttgaggaggagcacactcccacatctccagtcaataccaccaaactaacccaagtgggtt 17108974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 533
Target Start/End: Original strand, 4844519 - 4844583
Alignment:
Q  469 cctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatg 533  Q
    |||||||| | ||||||||||||||||| | ||| ||||||||||||| |||| |||||||||||    
T  4844519 cctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatg 4844583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 469 - 533
Target Start/End: Original strand, 4870215 - 4870279
Alignment:
Q  469 cctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatg 533  Q
    |||||||| | ||||||||||||||||| | ||| ||||||||||||| |||| |||||||||||    
T  4870215 cctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaatg 4870279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 455 - 539
Target Start/End: Complemental strand, 14339691 - 14339608
Alignment:
Q  455 agggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    ||||||||||||| |||||||| ||||||||||||||||||| | ||| |||| |||||||| |||  ||| |||| ||||||||    
T  14339691 agggagaatcgaa-cctgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggccaatccaactgggttaa 14339608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 456 - 536
Target Start/End: Original strand, 47454613 - 47454692
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggt 536  Q
    |||||||||||| |||||||| | ||||||||||||||||| | |||||||| ||||||||  ||| |||||||| |||||    
T  47454613 gggagaatcgaa-cctgagacctcgaggaggagcacactccaagatctcaagccaataccactagaacaacccaagtgggt 47454692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 36720459 - 36720381
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| ||||| || | ||||||||||||||||| ||||| |||| |||||||| |||| |||||||| ||||||    
T  36720459 gagaatcgaa-cctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagaccaacccaagtgggtt 36720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 8501579 - 8501624
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaat 512  Q
    ||||||| |||||||||||||||||||||| | |||||||||||||    
T  8501579 aacctgaaactttgaggaggagcacactcccagatctcaagtcaat 8501624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 537
Target Start/End: Original strand, 2597226 - 2597296
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |  |||||||||||||||||| |||  ||| |||||||| |||| |||||||| ||||||    
T  2597226 aacctgagacctcaaggaggagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggtt 2597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 4222219 - 4222162
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| ||| |||||||||||||||||||||||| | ||| |||| ||||||||    
T  4222219 gagaatcgaa-cctaagactttgaggaggagcacactcccagatcccaagccaatacca 4222162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 467 - 537
Target Start/End: Original strand, 5499413 - 5499483
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||| |||| || |||||||||||||||  | ||||||||||||||||| |||  |||||||| ||||||    
T  5499413 aaccttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaacccaagtgggtt 5499483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 516
Target Start/End: Original strand, 37788463 - 37788520
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| |||||||| |||||||||||||||||||||  |  |||||||||||||    
T  37788463 gagaatcgaa-cctgagaccttgaggaggagcacactcctaggttccaagtcaatacca 37788520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 516
Target Start/End: Complemental strand, 44069829 - 44069779
Alignment:
Q  466 aaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    ||||||||||| ||||||||||||||||||| | |||||||| ||| ||||    
T  44069829 aaacctgagaccttgaggaggagcacactccaagatctcaagccaacacca 44069779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 454 - 516
Target Start/End: Original strand, 49494140 - 49494201
Alignment:
Q  454 cagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||| | || ||||||||||||||    
T  49494140 cagggagaatc-aaacctgagacctcgaggaagagcacactcccaaatttcaagtcaatacca 49494201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 540
Target Start/End: Original strand, 10682950 - 10683022
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaat 540  Q
    |||||||||||||||| || |||||||||| |  ||||||| ||||||||  |||||||||||| |||| ||||    
T  10682950 aacctgagactttgag-agaagcacactccaaggtctcaagccaataccactagatcaacccaagtgggataat 10683022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 19341860 - 19341799
Alignment:
Q  478 ttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    ||||||||||||||||||| |  ||||||||| ||||||  ||  |||||||||||||||||    
T  19341860 ttgaggaggagcacactcccaagtctcaagtctataccactagggcaacccaaatgggttaa 19341799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 47860833 - 47860795
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactccta 498  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  47860833 gagaatcgaa--ctgagactttgaggaggagcacactccta 47860795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 29563978 - 29563915
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagat 522  Q
    |||||||||| |||||||||| |||||| |||||||| | | |||||||| |||||||| |||||    
T  29563978 gagaatcgaa-cctgagacttcgaggagaagcacacttccagatctcaagccaataccaccagat 29563915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 458 - 538
Target Start/End: Original strand, 51903876 - 51903955
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtta 538  Q
    |||||||||| ||||||||   ||||||||||||||||| | ||| |||| |||||||| ||| ||||||||  |||||||    
T  51903876 gagaatcgaa-cctgagaccacgaggaggagcacactcccagatcccaagccaataccaacaggtcaacccaggtgggtta 51903955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 534
Target Start/End: Complemental strand, 8268701 - 8268641
Alignment:
Q  474 gactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgg 534  Q
    ||||||||||||||||||||||| | |||||||| ||| |||| |||| ||||||||||||    
T  8268701 gactttgaggaggagcacactcccaaatctcaaggcaacaccatcagaccaacccaaatgg 8268641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 537
Target Start/End: Complemental strand, 33549182 - 33549104
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| | ||||||||||||||||| |  || |||| |||||||| |||| |||||||| ||||||    
T  33549182 gagaatcgaa-cctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 537
Target Start/End: Complemental strand, 9877028 - 9876974
Alignment:
Q  483 gaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||||| |  ||||||||||| |||| ||||||||| ||||||||||    
T  9877028 gaggagcacactccaaagtctcaagtcaacaccatcagatcaactcaaatgggtt 9876974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Original strand, 10338180 - 10338229
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| |||||||||||||||||||||  || |||| ||||||||    
T  10338180 aacctgagaccttgaggaggagcacactcctaggtcccaagccaatacca 10338229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 24641209 - 24641266
Alignment:
Q  480 gaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||||||||||||| | ||| ||||||||||||| ||   |||||||||||||||    
T  24641209 gaggaggagcacactcccagatcccaagtcaataccaccaagccaacccaaatgggtt 24641266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 467 - 539
Target Start/End: Complemental strand, 30127470 - 30127398
Alignment:
Q  467 aacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggttaa 539  Q
    |||||||||| | || |||||||||||||| | | | |||| |||||||| |||| |||||||| ||||||||    
T  30127470 aacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagaccaacccaagtgggttaa 30127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 530
Target Start/End: Complemental strand, 34444885 - 34444810
Alignment:
Q  454 cagggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    |||||||||||||| |||||||| ||| ||||||||||||||  |  || ||||||||||||| |||  ||||||||    
T  34444885 cagggagaatcgaa-cctgagaccttggggaggagcacactctaaggtcccaagtcaataccaccaggccaacccaa 34444810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Original strand, 13044 - 13101
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaatacca 516  Q
    |||||||||| |||||||| ||||||||||||||||||| | |||||||| ||||||||    
T  13044 gagaatcgaa-cctgagaccttgaggaggagcacactcccagatctcaagccaatacca 13101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 537
Target Start/End: Original strand, 2466 - 2546
Alignment:
Q  456 gggagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||||| |||||||| ||||||||||||||||||| | |||  ||  |||||||| | || |||||||||||||||    
T  2466 gggagaatcgaa-cctgagaccttgaggaggagcacactcccagatccaaaaccaataccaccggaccaacccaaatgggtt 2546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 5299 - 5233
Alignment:
Q  470 ctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    ||||||| ||||| ||||||||||||| ||||   |||||||||||| ||||||||||||| ||||||    
T  5299 ctgagaccttgag-aggagcacactcccatattctaagtcaataccaccagatcaacccaagtgggtt 5233  T

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Target: scaffold0258 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 537
Target Start/End: Original strand, 15321 - 15399
Alignment:
Q  458 gagaatcgaaacctgagactttgaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaaatgggtt 537  Q
    |||||||||| |||||||| | ||||||||||||||||| |  || |||| |||||||| |||| |||||||| ||||||    
T  15321 gagaatcgaa-cctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 480 - 530
Target Start/End: Original strand, 157006 - 157056
Alignment:
Q  480 gaggaggagcacactcctatatctcaagtcaataccagcagatcaacccaa 530  Q
    ||||||||||||||||| | |||||||| |||||||| ||| |||||||||    
T  157006 gaggaggagcacactcccagatctcaagccaataccaacaggtcaacccaa 157056  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 6925 - 6954
Alignment:
Q  467 aacctgagactttgaggaggagcacactcc 496  Q
    ||||||||||||||||||||||||||||||    
T  6925 aacctgagactttgaggaggagcacactcc 6954  T

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