View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1802_high_11 (Length: 404)

Name: NF1802_high_11
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1802_high_11
NF1802_high_11
[»] chr3 (3 HSPs)
chr3 (16-390)||(8341424-8341796)
chr3 (75-322)||(26727089-26727336)
chr3 (357-390)||(8332980-8333013)
[»] chr1 (5 HSPs)
chr1 (50-325)||(44786005-44786280)
chr1 (26-320)||(44611310-44611604)
chr1 (124-320)||(44144468-44144664)
chr1 (43-223)||(35898699-35898879)
chr1 (40-189)||(11544994-11545143)
[»] scaffold0017 (2 HSPs)
scaffold0017 (26-320)||(173423-173712)
scaffold0017 (26-323)||(168405-168703)
[»] scaffold0061 (1 HSPs)
scaffold0061 (26-323)||(30089-30387)
[»] chr2 (2 HSPs)
chr2 (76-318)||(29228864-29229106)
chr2 (76-318)||(29342163-29342405)
[»] chr5 (2 HSPs)
chr5 (26-302)||(29508253-29508529)
chr5 (108-186)||(20761969-20762047)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 8341796 - 8341424
Alignment:
Q  16 tgaatcgtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcg 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8341796 tgaatggtgtagatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatctgcagttggaccgtccttccatgcg 8341697  T
Q  116 gacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341696 gacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagt 8341597  T
Q  216 tgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341596 tgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctct 8341497  T
Q  316 aatggatgtttatattcttatacaaacacacacacatatatatatagaaaattatgtttaaggaaggtgtatttt 390  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  8341496 aatggatgtttatattcttatacaaacacacacacatata--tatagaaaattgtgtttaaggaaggtgtatttt 8341424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 75 - 322
Target Start/End: Complemental strand, 26727336 - 26727089
Alignment:
Q  75 tccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctc 174  Q
    |||||||||||||||| ||| || || | |||||||||| |||||| |||||||| |||||| ||| |||||||||||| ||||||||||| ||||||||    
T  26727336 tccatttgcagcaatctgcattttgatcatccttccatgtggacaaaatgccatactcatcttgaaggccttgtttgaatgtgaggagtgcatgtctctc 26727237  T
Q  175 cctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagttt 274  Q
    |||||||||||||||  | || || ||  | ||| |||||||||||||| ||||| | ||||||||||||||||||| |||| ||| |||| ||||||||    
T  26727236 cctctctttgcacttcttgtctccgttcttcattgttgagttgaacccaacaatggaagacaacaccaacaatgcatagaatataagaataatatagttt 26727137  T
Q  275 cccatcattatttcaacaacaaaataaagatgagattctctaatggat 322  Q
    | |||||| ||||||||||||||||||||||| | |||||||||||||    
T  26727136 ctcatcataatttcaacaacaaaataaagatgggtttctctaatggat 26727089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 8333013 - 8332980
Alignment:
Q  357 atatagaaaattatgtttaaggaaggtgtatttt 390  Q
    |||||||||||| |||||||||||||||||||||    
T  8333013 atatagaaaattgtgtttaaggaaggtgtatttt 8332980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 50 - 325
Target Start/End: Original strand, 44786005 - 44786280
Alignment:
Q  50 gtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtt 149  Q
    ||||| ||||||||||||| ||||| ||||||||| ||||| ||| |||||||||| ||| ||| |||||||||||||||||||||| ||| ||||||||    
T  44786005 gtttggttgttgcattgaactccttcccatttgcaacaatctgcatttggaccgtctttcgatgtggacaacatgccataatcatcttgaatgccttgtt 44786104  T
Q  150 tgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgc 249  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||| || || ||   | || ||||||||||||||||||||||||| ||||||||||||||    
T  44786105 tgaatgtgaggagtgcttgtctctcactcactttgcactttgtgtctcccttctcttttattgagttgaacccagcaatgaaggagaacaccaacaatgc 44786204  T
Q  250 atggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatggatgtt 325  Q
    ||| |||||||||||| ||||||||| |||||| |||||||  ||||||||||||||||||||||| |||||||||    
T  44786205 atgtaatgtaataatattatagtttctcatcatcatttcaaagacaaaataaagatgagattctcttatggatgtt 44786280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 26 - 320
Target Start/End: Complemental strand, 44611604 - 44611310
Alignment:
Q  26 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 125  Q
    ||||||||  ||| ||||||||| |||||| |||||||||||| ||| ||||||||||||||||| |||  || ||| |||||||||| ||||||||| |    
T  44611604 agatcaagactttgaacataaccagtttgaatgttgcattgaactcccttccatttgcagcaatctgcatctgaaccctccttccatgtggacaacatac 44611505  T
Q  126 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 225  Q
    |||| |||||| ||| | ||||||| ||||||||||||||  |||||||||||||||||||||| || |  |||||| || ||    ||||||||||| |    
T  44611504 catactcatcttgaaggtcttgtttaaacgtgaggagtgcacgtctctccctctctttgcacttcgtgtttccattatttgttgccaagttgaacccaac 44611405  T
Q  226 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatgg 320  Q
    |||| || ||||||||||||||||||  |||||| ||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||    
T  44611404 aatggagaacaacaccaacaatgcatttaatgtattaatattatagtttctcatcataatttcaacaacaaaataaagatgaaattctctaatgg 44611310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 124 - 320
Target Start/End: Complemental strand, 44144664 - 44144468
Alignment:
Q  124 gccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaaccca 223  Q
    |||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||||  || ||  ||||||||||| |    
T  44144664 gccatagtcatcttgaacaccttgtttgaaagtgaggagtgcgtgtctctccctctctttgcactttgtgtctacattctttgttgctgagttgaaccta 44144565  T
Q  224 gcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatgg 320  Q
     ||||| |||| ||||||||||||||||| |||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  44144564 tcaatggaggataacaccaacaatgcatgtaatgcaataatattatagtttctcatcatcatttcaacaacaaaataaagatgagattctctaatgg 44144468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 35898879 - 35898699
Alignment:
Q  43 ataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacg 142  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||  || |||||||  |||||||| || || || ||| ||| |    
T  35898879 ataaccagtttggttgttgcattgaactcctttccatttgcagcaatctgcatttggactatcattccatgtagacaacataccgtactcgtcttgaagg 35898780  T
Q  143 ccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaaccca 223  Q
    |||||||||||   |||||| || |||||||||||||||||||| || ||||| ||||||  ||||  |||||||||||||    
T  35898779 ccttgtttgaaaccgaggagagcatgtctctccctctctttgcagttggtatctccattatctattgctgagttgaaccca 35898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 11544994 - 11545143
Alignment:
Q  40 aacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcga 139  Q
    ||||||||| ||||| ||||||||  ||| |||||||||||| || ||||| |   || ||  ||  |||||||  ||||||||| |||| | ||||  |    
T  11544994 aacataacctgtttggttgttgcaacgaactcctttccatttacaacaatctgggttttgattgttgttccatgtcgacaacatgtcatacttatcttca 11545093  T
Q  140 acgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactt 189  Q
    | |  ||||||||| ||||||||||| ||||||||||||||| |||||||    
T  11545094 aggttttgtttgaatgtgaggagtgcatgtctctccctctctgtgcactt 11545143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 26 - 320
Target Start/End: Complemental strand, 173712 - 173423
Alignment:
Q  26 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 125  Q
    ||||||||  ||| ||||||||| ||||   |||||||||||| ||| |||||||||||||||||  || || ||||| ||||||||| |||||||||||    
T  173712 agatcaagactttgaacataaccagtttcgatgttgcattgaactcccttccatttgcagcaatcttcattttgaccgcccttccatgtggacaacatgc 173613  T
Q  126 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 225  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||||||||||  | || |||||  || || || ||||||||||| |    
T  173612 cataatcatcttgaaggccttgtttgaacgtgaggagtgcgcgtctctctctctctttgcacttcatgtctccattctttgttgttaagttgaacccaac 173513  T
Q  226 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaagatgagattctctaatgg 320  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||     || || ||||||||||||||||||||    
T  173512 aatgaaggacaacaccaacagtgcatgtaatgtaataatattatagtttctcatcattatttca-----aacattaagatgagattctctaatgg 173423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 26 - 323
Target Start/End: Complemental strand, 168703 - 168405
Alignment:
Q  26 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| |    
T  168703 agatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacatac 168604  T
Q  126 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 225  Q
    |||| |||||| ||| ||||||||| || |||| |||||  ||||||||||| |||||||||| ||| || |||||  || ||  ||||||||||||| |    
T  168603 catagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaac 168504  T
Q  226 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaat-aaagatgagattctctaatggatg 323  Q
    |||| || ||||||| ||||||||||| ||||||  |||| ||||||||| |||||| ||||||||  |||||| ||| | ||| ||||||||||||||    
T  168503 aatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttctcatcatcatttcaactgcaaaataaaaaaagaggttctctaatggatg 168405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 26 - 323
Target Start/End: Original strand, 30089 - 30387
Alignment:
Q  26 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| | |||||||||| ||||||||| |    
T  30089 agatcaagcttttcaacataaccggtttgattgttgcattgaactcccttccatttgcagcaatctgcatttggatcctccttccatgtggacaacatac 30188  T
Q  126 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 225  Q
    |||| |||||| ||| ||||||||| || |||| |||||  ||||||||||| |||||||||| ||| || |||||  || ||  ||||||||||||| |    
T  30189 catagtcatcttgaaggccttgtttcaaagtgacgagtgaatgtctctccctttctttgcactgtgtgtctccattctttgttgctgagttgaacccaac 30288  T
Q  226 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaat-aaagatgagattctctaatggatg 323  Q
    |||| || ||||||| ||||||||||| ||||||  |||| ||||||||| |||||| ||||||||  |||||| ||| | ||| ||||||||||||||    
T  30289 aatggagaacaacactaacaatgcatgtaatgtagcaatattatagtttctcatcatcatttcaactgcaaaataaaaaaagaggttctctaatggatg 30387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 76 - 318
Target Start/End: Original strand, 29228864 - 29229106
Alignment:
Q  76 ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctcc 175  Q
    ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||||||| |||| ||||| |||||||||    
T  29228864 ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctcc 29228963  T
Q  176 ctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 275  Q
    |||||||||||||||||||| |||||| || ||  || |||||||||| ||||| |||||||||| ||||||||||| |||||| ||||| |||||||||    
T  29228964 ctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttc 29229063  T
Q  276 ccatcattatttcaacaacaaaataaagatgagattctctaat 318  Q
     |||||| |||||||||||||| ||| ||||| ||||||||||    
T  29229064 tcatcatcatttcaacaacaaagtaatgatgacattctctaat 29229106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 76 - 318
Target Start/End: Original strand, 29342163 - 29342405
Alignment:
Q  76 ccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctcc 175  Q
    ||||||||| ||||| |||||||||||||| ||||||| | |||||||| |||  ||||||  || ||||||||||||| |||| ||||| |||||||||    
T  29342163 ccatttgcaacaatctgcagttggaccgtctttccatgtgaacaacatgacattctcatctttaaggccttgtttgaacctgagcagtgcttgtctctcc 29342262  T
Q  176 ctctctttgcactttgtatcgccattaattatttttgagttgaacccagcaatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttc 275  Q
    |||||||||||||||||||| |||||| || ||  || |||||||||| ||||| |||||||||| ||||||||||| |||||| ||||| |||||||||    
T  29342263 ctctctttgcactttgtatctccattatttgttgctgtgttgaacccaacaatgcaggacaacactaacaatgcatgaaatgtagtaatattatagtttc 29342362  T
Q  276 ccatcattatttcaacaacaaaataaagatgagattctctaat 318  Q
     |||||| |||||||||||||| ||| ||||| ||||||||||    
T  29342363 tcatcatcatttcaacaacaaagtaatgatgacattctctaat 29342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 29508253 - 29508529
Alignment:
Q  26 agatcaagcttttcaacataaccggtttgattgttgcattgaattcctttccatttgcagcaatcagcagttggaccgtccttccatgcggacaacatgc 125  Q
    ||||||||  ||| ||||||||| ||||||||||||||| ||| ||| |||||||||||||||||  || ||||  |||||||||||| |||||||||||    
T  29508253 agatcaagtctttgaacataacctgtttgattgttgcatcgaactcccttccatttgcagcaatcttcatttgggtcgtccttccatgtggacaacatgc 29508352  T
Q  126 cataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgcactttgtatcgccattaattatttttgagttgaacccagc 225  Q
    |||| |||||| ||| ||||| ||||||  |||||||||| | ||||||| ||||||  |||||  | ||  ||||    |||   |||||||||||| |    
T  29508353 catactcatcttgaaggccttctttgaatttgaggagtgcatttctctccttctcttcacacttcatttcatcattctccattgcagagttgaacccaac 29508452  T
Q  226 aatgaaggacaacaccaacaatgcatggaatgtaataatagtatagtttcccatcattatttcaacaacaaaataaa 302  Q
    ||||||| | ||||| ||||||||||||||  ||| |||  ||||||||| |||||| |||| | ||||||||||||    
T  29508453 aatgaagaataacacaaacaatgcatggaacataagaatcatatagtttctcatcataatttgaccaacaaaataaa 29508529  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 20761969 - 20762047
Alignment:
Q  108 tccatgcggacaacatgccataatcatctcgaacgccttgtttgaacgtgaggagtgcgtgtctctccctctctttgca 186  Q
    |||||| ||| | |||||||||||||||| | | ||||||||||||| | | |||||| | ||||||||||||||||||    
T  20761969 tccatgtggaaagcatgccataatcatcttggaggccttgtttgaaccttaagagtgcttctctctccctctctttgca 20762047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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