View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1802_high_13 (Length: 398)
Name: NF1802_high_13
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 12318568 - 12318949
Alignment:
| Q |
1 |
cgtcagtaatagcaattgcggccgcaactgcaactaaatcagccacatttatctgcaaaattaccacaataccaaggatgaatgcaaccgcgaccataaa |
100 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12318568 |
cgtcagtaatagcaattgtggccgcaattgcaactaaatcagccacatttatctacaaatttaccacaataccaaggatgaacgcaaccgcgaccataaa |
12318667 |
T |
|
| Q |
101 |
agaaattttgaaccatatttacatatttatataaagaaaaaatggttttatgtaatgaacaaggaaattgaagaagcattcttacttgaaaaactagtcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12318668 |
agaaattttgaaccatatttacatatttatataaagaaaaaatggttttatgtgatgaacaaggaaattgaagaagcattcttacttgaaaaactagtcc |
12318767 |
T |
|
| Q |
201 |
tggtttgcatggacctgaaaagatggtagaagtgattttaaaacagtaattttcaggagctaaaagaactcctgaatcaactgcacaagctgctttccat |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12318768 |
tggtttgcatggacctgaaaagatagtagaagtgattttaaaacagtaattttcaggagctaaaagaactcctgaatcaactgcacaagctgctttccat |
12318867 |
T |
|
| Q |
301 |
gctgctctaaatgcggctgtatcatcagcatcaccgtctccaactgctccgaatgatcttacatcgaaaacgcagttagaag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12318868 |
gctgctctaaatgcggctgtatcatcagcatcaccgtctccaactgctccgaatgatcttacatcgaaaacgcagttagaag |
12318949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 38833200 - 38833077
Alignment:
| Q |
180 |
tcttacttgaaaaactagtcctggtttgcatggacctgaaaagatggtagaagtgattttaaaacagtaattttcaggagctaaaagaactcctgaatca |
279 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||| || | |||||||| ||||| ||||||||| ||| | | ||||| ||||| || |
|
|
| T |
38833200 |
tcttacttgaaatactaatcctggtttgcatggacctgaaaaaataattgaagtgatcataaaagtgtaattttctggaaccagaagaatccctgactct |
38833101 |
T |
|
| Q |
280 |
actgcacaagctgctttccatgct |
303 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
38833100 |
acagcacaagctgctttccatgct |
38833077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University