View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_15 (Length: 382)
Name: NF1802_high_15
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 5230188 - 5230536
Alignment:
| Q |
13 |
aatataataaataattaaggatataatagcagaaaaacgaatgatttcatcaaaaataacaaaacttgttcgnnnnnnnaatatgtgtaaataaccttaa |
112 |
Q |
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| T |
5230188 |
aatataataaataattaaggatataatagcagaaaaatgaataatttcttcaaaaataacaaaacttgttcgttttcttaatatgtgtaaataaccttaa |
5230287 |
T |
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| Q |
113 |
tacgtagattaaaaaagaggggagtgcgtaattagcttcgcaaatgcaccaaaactatctcatcatattctcattctactttccnnnnnnnnnnnnnnnn |
212 |
Q |
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| T |
5230288 |
aacgtagattaaaaaagaggggagtgcgtaattagcttcgcaaatgcaccaaaactatctcatcatattctcattctactttcc-----ttttttttctt |
5230382 |
T |
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| Q |
213 |
nnngctttaccaatttgactcttgataatgtaatttttcaacagatgacagaaaaattgaggatgttgttttaaatgcctcatggattgatgataggttt |
312 |
Q |
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| T |
5230383 |
tttgctttaccaatttgactcttgataatgtaatttttcaacagatgacagaaaaattgaggatgtggttttaaatgcctcatggattgatgataggttt |
5230482 |
T |
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| Q |
313 |
gattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaacagt |
366 |
Q |
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| T |
5230483 |
gattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaacagt |
5230536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 25338224 - 25338294
Alignment:
| Q |
293 |
catggattgatgataggtttgattttgatccagaagaatgcaatgttgctaatggaaaatggatatttaac |
363 |
Q |
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| T |
25338224 |
catggattgatgacaggtttgattttgactcagaagaatgcaacattgccaatggaaaatgggtttttaac |
25338294 |
T |
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