View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_24 (Length: 317)
Name: NF1802_high_24
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_24 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 21492612 - 21492928
Alignment:
| Q |
1 |
ttcaaaattaccatcttcttttctttctgtttcagtaatagttgctctcttgctggcaactactgaaccagtgacctctcagaaaacaacttccttcgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21492612 |
ttcaaaattaccatcttcttttctttctgtttcaataatagttgctctcatgctggcaactactgaaccagtgacctctcagaaaacaacttccttcgac |
21492711 |
T |
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| Q |
101 |
tttcaaaatttcacttctggtcaatctgatttaatcatgcaaggtagtaccgcgattttaccaaatggggtaatggcactcaccaaccaaactaaccctg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21492712 |
tttcaaaacttcacttctggtcaatctgatttaatcatgcaaggtagtaccgcgattttaccaaatggggtaatggcactcaccaacccaactaacccta |
21492811 |
T |
|
| Q |
201 |
atactggacgggtgttgtattcaaattcggtgcctatttgggatcgtactaccggacatgttgctagcttcatcgcttccttctccttcgtcgttgagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21492812 |
atactggacgggtgttgtattcaaattcggtgcctatttgggatcgtactaccggacatgttgctagcttcatcgcttccttctccttcgtcgttgagga |
21492911 |
T |
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| Q |
301 |
ttatcaaggttatatgc |
317 |
Q |
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||||||||||||||||| |
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| T |
21492912 |
ttatcaaggttatatgc |
21492928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 21488799 - 21489112
Alignment:
| Q |
1 |
ttcaaaattaccatcttcttttctttctgtttcagtaatagttgctctcttgctggcaactactgaaccagtgacctctcagaaaacaacttccttcgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21488799 |
ttcaaaattaccatcttcttttctttctgtttcagtaatagttgctctcttgctggcaactactgaactagtgacctctcagaaaacaacttccttcgac |
21488898 |
T |
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| Q |
101 |
tttcaaaatttcacttctggtcaatctgatttaatcatgcaaggtagtaccgcgattttaccaaatggggtaatggcactcaccaaccaaactaaccctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| | |
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| T |
21488899 |
tttcaaaatttcacttctggtcaatctgatttaatcatgcaaggtagtaccgcgattttaccaaatggggtaatggccctaaccaacctttctaaacaaa |
21488998 |
T |
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| Q |
201 |
atactggacgggtgttgtattcaaattcggtgcctatttgggatcgtactaccggacatgttgctagcttcatcgcttccttctccttcgtcgttgagga |
300 |
Q |
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||||||||||||||||||||||||| | ||| ||||||||||| ||||||| |||||||| ||||||||| | ||||||| ||||| |||||||| |
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| T |
21488999 |
gtactggacgggtgttgtattcaaatccagtgactatttgggatagtactactggacatgtcgctagcttcgttacttcctttaccttcacggttgagga |
21489098 |
T |
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| Q |
301 |
ttatcaaggttata |
314 |
Q |
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|||||||||||||| |
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| T |
21489099 |
ttatcaaggttata |
21489112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 21482460 - 21482748
Alignment:
| Q |
1 |
ttcaaaattaccatcttcttttctttctgtttcagtaatagttgctctcttgctggcaactactgaaccagtgacctctcagaaaacaacttccttcgac |
100 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21482460 |
ttcaaaattaccattttattttctttctgtttcagtaatagttgctctcttgctggcaactactgaaccagtgacctctcagaaaacaacttccttcgac |
21482559 |
T |
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| Q |
101 |
tttcaaaatttcacttctggtcaatctgatttaatcatgcaaggtagtaccgcgattttaccaaatggggtaatggcactcaccaaccaaactaaccctg |
200 |
Q |
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|||||||| ||||| || |||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||||| |||| ||| |
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| T |
21482560 |
tttcaaaaattcacctcaggtcaatctgatttaatcatgcaaggtagtactgagattttttcaaatgggataatggcactcaccaacccttctaagccta |
21482659 |
T |
|
| Q |
201 |
atactggacgggtgttgtattcaaattcggtgcctatttgggatcgtactaccggacatgttgctagcttcatcgcttccttctccttc |
289 |
Q |
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||| |||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21482660 |
atattggacgggtgttgtattcaaatccagtgcctatttgggatagtactactggacatgttgctagcttcgtcgcttccttctccttc |
21482748 |
T |
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