View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_3 (Length: 624)
Name: NF1802_high_3
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 11 - 624
Target Start/End: Original strand, 5229605 - 5230211
Alignment:
| Q |
11 |
cacagagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccagcaaagatgttaatttttcaagtcttgtcttaactcttaactacca |
110 |
Q |
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| T |
5229605 |
cacaaagccaaagatgttgttaatctttcaaagtcttatcttaattcttaaccacaaaagatgttaatctttcaagtcttgtcttaactcttaactacca |
5229704 |
T |
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| Q |
111 |
tcattggcatagtttaatcacaactaatgaaccaaacatatatactatatatgctttaacttcactcctactcnnnnnnnnnnnnnnnnnnnntcattaa |
210 |
Q |
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| T |
5229705 |
tcattggcatagtttaatcacaaccaatgaaccaaacatatatactatatatgctttaacttcactcctactcaaaaaataaaaaaataaaa-tcattaa |
5229803 |
T |
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| Q |
211 |
accctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcag |
310 |
Q |
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| T |
5229804 |
accctctcaacaattttatcatcattttgtttctcaatgcattaattcatactctttcttcacatctttaatcttcttccattcctcatgaacccttcag |
5229903 |
T |
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| Q |
311 |
aaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatctgcattcttcttttctctatagttttgtatgctgagaggctcag |
410 |
Q |
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| T |
5229904 |
aaacaatgaagcttcttaggaaaaagctttctcttccaatcattattaccacaatctgcattcttctcttctctatagttttgtttgctgagaggctcag |
5230003 |
T |
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| Q |
411 |
tttcatttcttccacttctattttcaagttcaaaacatgccctagaaagcacatcaaatcaaaatctagtaagttactttactccattctttttatgtca |
510 |
Q |
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| T |
5230004 |
tttcatttcttccacttctattttcaagttcaaaacatgccctagaaagcacatcaaatcaaaatctagtaagttactttactccattctttttatgtca |
5230103 |
T |
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| Q |
511 |
gtttcaaagtttagtacaatattatctattgttctatcaataataataaccttaattattatttattggaaagtgaaacatgttcgaaataatataataa |
610 |
Q |
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| T |
5230104 |
gtttcaaagtttagtacaatattatctattgttctatc---aataataacctta---attatttattggaaagtgaaacatgttaaaaataatataataa |
5230197 |
T |
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| Q |
611 |
ataattaaggatat |
624 |
Q |
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| T |
5230198 |
ataattaaggatat |
5230211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 25337764 - 25337834
Alignment:
| Q |
388 |
gttttgtatgctgagaggctcagtttcatttcttccacttctattttcaagttcaaaacatgccctagaaa |
458 |
Q |
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| T |
25337764 |
gttttgtatgcagagagactcagttttctttcttctaagtccattttcaagttcaaaccttgccctagaaa |
25337834 |
T |
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