View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_34 (Length: 255)
Name: NF1802_high_34
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 31389575 - 31389804
Alignment:
| Q |
11 |
ttattctacgtgtgatatttatgctttcatttaattgaagaagaatactgacatatttttgtaatgaggcagagtttgaaatcaagctctctatttggag |
110 |
Q |
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| T |
31389575 |
ttattctacgtgtgatatttatgcttttatttaattgaagaagaatactaacatgtttttgtaatgaggcagagtttgaaatcaagctctttatttggag |
31389674 |
T |
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| Q |
111 |
aatctcttagagtgtcatctaaatcaacacttaagttttcaagggcaaagagtacttcagtcataaccaaatgcgaaattggagacagtttggtgagtta |
210 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
31389675 |
aatctcttagagtgtcatctaaatcaacactgaaattttcaagggcaaagagtacttcagtgataaccaaatgcgaaatcggagacagtttggtgagtta |
31389774 |
T |
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| Q |
211 |
cttacatgtgtggtctatgagttttgaact |
240 |
Q |
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| T |
31389775 |
cttacatgtgtggtctatgtgttttgaact |
31389804 |
T |
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