View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_40 (Length: 236)
Name: NF1802_high_40
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34026266 - 34026485
Alignment:
| Q |
1 |
cttatcaatcactgtatctccttaggacaatctttttgggttatcaccgatgggtaaacccaaatatttaaaatggagatggctcattttacaattcaac |
100 |
Q |
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| T |
34026266 |
cttatcaatcactacatctccttaggacaatcttttcgggttatcaccgatgggtaaacccaaatatttaaaatggagatggctcattttacaattcaac |
34026365 |
T |
|
| Q |
101 |
attctcattgtgtcctccacccaatagtgattcaagttaactagatctcaatacaaggactaatcaaaaacataaagttgaaacaaacaattgaataaat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34026366 |
attctcattgcgtcctccacccaatagtgattcaagttaactagatctcaatacaaggaataatcaaaaacataaagttgaaacaaacaattgaataaat |
34026465 |
T |
|
| Q |
201 |
tatgaaactagatctcaaat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
34026466 |
tatgaaactagatctcaaat |
34026485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 22377162 - 22377204
Alignment:
| Q |
149 |
caatacaaggactaatcaaaaacataaagttgaaacaaacaat |
191 |
Q |
| |
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|||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
22377162 |
caatacaaggactaatcagagacataaagttgaaacaaacaat |
22377204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 30733863 - 30733821
Alignment:
| Q |
149 |
caatacaaggactaatcaaaaacataaagttgaaacaaacaat |
191 |
Q |
| |
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|||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
30733863 |
caatacaaggactaatcagagacataaagttgaaacaaacaat |
30733821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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