View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1802_high_5 (Length: 534)
Name: NF1802_high_5
Description: NF1802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1802_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 353 - 526
Target Start/End: Original strand, 30697391 - 30697565
Alignment:
| Q |
353 |
catcacacatcaattcttcaactgttcacactaacacctgattatgtcataaccacacatcaatggcacatcaa-ctttatctttnnnnnnntaaaacat |
451 |
Q |
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| T |
30697391 |
catcacacatcaattcttcaactgttcacactaacacctgattatgtcataaccacacatcaatggcacatcaaactttttctttgaaaaaataaaacat |
30697490 |
T |
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| Q |
452 |
caactttttatctattgttatttaataataattaatatttattaccaaaccaagtaattcctcatttttcatctc |
526 |
Q |
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| T |
30697491 |
caactttttatctattattatttaataataattaatatttattaccaaaccaagtaattcctcatttttcatctc |
30697565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 30697063 - 30697321
Alignment:
| Q |
19 |
atctctagaaataactttgaataaaaattgactatttgctaaccctgtatcttttattttgttttctaattagtttgttggaaagacaagatatttcaag |
118 |
Q |
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| T |
30697063 |
atctctagaaataactttgaataaaaattgactatttgctaacccggtatcttttattttgttttctaattagtttgctgcaaagacaagatatttcaag |
30697162 |
T |
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| Q |
119 |
ggtaagtgtactnnnnnnnnnnnnnnnnnnnnnncatagttccatcaaccacaaggcactaatgtcaaggatttagctccaagttcatctttcatcagca |
218 |
Q |
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| T |
30697163 |
tgtaagtgtact-----gaagaaaagaaaagaaacacagttccatcaaccacaaggcactaatgtcaaagatttagctccaagttcatctttcatcagca |
30697257 |
T |
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| Q |
219 |
acaaattttcaaannnnnnnnnaccacgccttataccaaaaatccaacaatgacacacatcagg |
282 |
Q |
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| T |
30697258 |
acaaattttcagatttttttttaccacgccttatatcaaaaatccaacaataacacatatcagg |
30697321 |
T |
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